BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH11FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig838 1346 0.0
>3x_Contig838
Length = 3732
Score = 1346 bits (679), Expect = 0.0
Identities = 735/750 (98%), Gaps = 3/750 (0%)
Strand = Plus / Plus
Query: 203 aacgcaggacaattatgaggggggggactattagagacctgatggccatggaaaatgtga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacgcaggacaattatgaggggggggactattagagacctgatggccatggaaaatgtga 69
Query: 263 gtatgtcgttatatatgtatcatcagcccggtatatatgcgtatatatgtgtaccactgc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gtatgtcgttatatatgtatcatcagcccggtatatatgcgtatatatgtgtaccactgc 129
Query: 323 catatatatacatataaatatattgacgcgatgcctcgtgactcagttacccggataaga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catatatatacatataaatatattgacgcgatgcctcgtgactcagttacccggataaga 189
Query: 383 gtttggtattccgggtaacgtccaattgtggctcgtgaacttttcccattgcaaaaatat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtttggtattccgggtaacgtccaattgtggctcgtgaacttttcccattgcaaaaatat 249
Query: 443 tagtatgtggtgtatgggttagtttcaccagcaaaacccaccctctaatctcatctcatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagtatgtggtgtatgggttagtttcaccagcaaaacccaccctctaatctcatctcatc 309
Query: 503 tcatctcatcccgtcactacacccagttctttccctaacgacgtgcagaatcataggtct 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcatctcatcccgtcactacacccagttctttccctaacgacgtgcagaatcataggtct 369
Query: 563 attctagctctgctcagttaccactcggtaccaaagcgataccatttcagaaatccgctt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attctagctctgctcagttaccactcggtaccaaagcgataccatttcagaaatccgctt 429
Query: 623 agtagcccttgaggcaaatggatatttccaggtgtcaaaaagatgatatatctacgtacc 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtagcccttgaggcaaatggatatttccaggtgtcaaaaagatgatatatctacgtacc 489
Query: 683 tactgatgagtaattagggtccgttccaggccagcccagcacagcatgggaaacatcgag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tactgatgagtaattagggtccgttccaggccagcccagcacagcatgggaaacatcgag 549
Query: 743 aaatgagacgcattatctatcatcttttgtttaaatttcacggtctcgctcactttctca 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaatgagacgcattatctatcatcttttgtttaaatttcacggtctcgctcactttctca 609
Query: 803 ataactttcttttttatagggtgccaatcttatgtattatattgnatataattgaagagt 862
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 610 ataactttcttttttatagggtgccaatcttatgtattatattgtatataattgaagagt 669
Query: 863 attactaagaaccctcttgttgagatgaggctgttctacagaattttgggtccagtgtta 922
| |||||| | ||| | ||||||||||||||||| |||| | ||| |||||||||| |
Sbjct: 670 a-tactaaagaacctttgtttgagatgaggctgttc-acaggagttttggtccagtgtaa 727
Query: 923 tgggattcgatttcccggggccctgtttaa 952
||||| ||||||||||| ||||||||||||
Sbjct: 728 tggga-tcgatttcccgtggccctgtttaa 756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7492
Number of Sequences: 1807
Number of extensions: 7492
Number of successful extensions: 570
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)