BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig584 1534 0.0
>3x_Contig584
Length = 3317
Score = 1534 bits (774), Expect = 0.0
Identities = 875/904 (96%), Gaps = 6/904 (0%)
Strand = Plus / Plus
Query: 46 actttctgcaggtattatt-aaggtcatgagtcaagttgatcaaattgaaattctcaagc 104
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actttctgcaggtatgaatcaaggtcatgagtcaagttgatcaaattgaaattctcaagc 624
Query: 105 tctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaatacgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgcaacgtcagatttcttataagcaaagatcgatgaaaacccatgttgttcaatacgt 684
Query: 165 ctgaaaaatttctcatggaacaaacactcgttgttatcatcgtattgtatgaatttatct 224
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 685 ctgaaaaatttctcatggaacaaacactcgttgttatcatcgtattggaagaatttatct 744
Query: 225 cgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccggaataa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cgaagcagcgggtcgtattcacccagaatcccatagtagaccccaccagaaccggaataa 804
Query: 285 tttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagtgttc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttaaagatcgacggacatacctctgctgggggctttgcggcgtccgatttaaagtgttc 864
Query: 345 aaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccatcata 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaattgtaaaaaggcgcatcctcattcaaaaacaccgcgagccattcatgttccatcata 924
Query: 405 gtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctcacac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gtgggcaaagagtctggctcaccctgcataaaactgcattcaatgcctcgattctcacac 984
Query: 465 aattggcatggtcctctatccgattctcttgtacattttttctttgatttggcacatgat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 aattggcatggtcctctatccgattctcttgtacattttttctttgatttggcacatgat 1044
Query: 525 ctacacgaagtaggcgttctgccactagctcgagccctcttcttccccctgccatctcca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ctacacgaagtaggcgttctgccactagctcgagccctcttcttccccctgccatctcca 1104
Query: 585 aattctataatcatctcaccaggagtctttctcttgccatttctcttatcttcactcatc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aattctataatcatctcaccaggagtctttctcttgccatttctcttatcttcactcatc 1164
Query: 645 attcaaagtcaataagatacttttactcatggaattgaggctgatctccgacatcaataa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 attcaaagtcaataagatacttttactcatggaattgaggctgatctccgacatcaataa 1224
Query: 705 ccttgagctggcaatggccagtccagatatcatattaaacttacaataaatagaagtagt 764
|||||||||||||||||| ||| |||||| | |||||| | | ||| |||||||||
Sbjct: 1225 ccttgagctggcaatggcaagtaaagatataagattaaaagaaaataaaagagaagtagt 1284
Query: 765 ggccgatgggtcttgntcatgccaagttgaagcttaac-tggctgcatttagcatgatga 823
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1285 ggccgatgggtcttgttcatgccaagttgaagcttaacttggctgcatttagcatgatga 1344
Query: 824 cgancagagaagagagtatctcacatgttattacccgnaccaacattttgataggggaaa 883
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 1345 cgacaagagaagagagtatctcacatgttattacccggaccaacattttgatagggg--a 1402
Query: 884 atttc-acatc-actgnaacttcanaaaccaacctttagctatgaacatattcagactaa 941
||||| ||||| |||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1403 atttcaacatcaactgaagcttcaaaaaccaacctttagctatgaacatattcagactaa 1462
Query: 942 ttta 945
||||
Sbjct: 1463 ttta 1466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6661
Number of Sequences: 1807
Number of extensions: 6661
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)