BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA02FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1596 0.0
>3x_Contig1768
Length = 25668
Score = 1596 bits (805), Expect = 0.0
Identities = 855/869 (98%), Gaps = 3/869 (0%)
Strand = Plus / Plus
Query: 84 atcgataaagattcgaatactaaccgagtaagacttattgataatatttcagaggatgaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685 atcgataaagattcgaatactaaccgagtaagacttattgataatatttcagaggatgaa 24744
Query: 144 gatgctaacgacagtagctcagagaaaacgatatctcaagaggaagctccggttgattca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24745 gatgctaacgacagtagctcagagaaaacgatatctcaagaggaagctccggttgattca 24804
Query: 204 gagatattattcttttagaagggtagaaagaaaataaaagccattgattactctaaagtt 263
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24805 gagatattattcaaaaagaagggtagaaagaaaataaaagccattgattactctaaagtt 24864
Query: 264 ttaaacttaataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24865 ttaaacttaataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatg 24924
Query: 324 tcagagaaagatgtggaggaacttcgattatcattagataacattaaaatctcagggaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24925 tcagagaaagatgtggaggaacttcgattatcattagataacattaaaatctcagggaaa 24984
Query: 384 gattgtcccaaacctgtaacgaaatggtcacagcttggtttgtcctctgaaatcatggat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24985 gattgtcccaaacctgtaacgaaatggtcacagcttggtttgtcctctgaaatcatggat 25044
Query: 444 cttatctccaacgaactacagtttgtaaccctcacaccaattcaatgccaggcaataccg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25045 cttatctccaacgaactacagtttgtaaccctcacaccaattcaatgccaggcaataccg 25104
Query: 504 gctattatgtcaggcagagatgttattggtatctcaaaaactgggtcagggaaaacggtc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25105 gctattatgtcaggcagagatgttattggtatctcaaaaactgggtcagggaaaacggtc 25164
Query: 564 gcttttctcctaccacttgttagacagatcaaggctcagccacctttagctcctgatgag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25165 gcttttctcctaccacttgttagacagatcaaggctcagccacctttagctcctgatgag 25224
Query: 624 actggtcctattggtcttatattgacaccgaccagagaattggccgttcagatacaagaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25225 actggtcctattggtcttatattgacaccgaccagagaattggccgttcagatacaagaa 25284
Query: 684 gaggcacttaaattttgtaaagggtctggcatttcaagcatctgttgcgtgggaggctcg 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25285 gaggcacttaaattttgtaaagggtctggcatttcaagcatctgttgcgtgggaggctcg 25344
Query: 744 gagttaaagcaacaaatcaatgaattgaaaagaggtgttgatatcattgtcgcaactcca 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25345 gagttaaagcaacaaatcaatgaattgaaaagaggtgttgatatcattgtcgcaactcca 25404
Query: 804 gggagattcattgatcttatgacattaaattcaggccatttgttatctcctac-agaaat 862
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 25405 gggagattcattgatcttatgacattaaattcaggccatttgttatctcctacaagaatt 25464
Query: 863 tcgtttgttgntatggatgaggcagatagacttttcgaccttggatttgnnaccc-agtc 921
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 25465 tcgtttgttgttatggatgaggcagatagacttttcgaccttggatttggaccccaagtc 25524
Query: 922 aaccaaataat-ggctgcatncgtccaga 949
|||||||| || |||||||| ||||||||
Sbjct: 25525 aaccaaattatgggctgcatccgtccaga 25553
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6412
Number of Sequences: 1807
Number of extensions: 6412
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)