BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA02RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig17 1205 0.0
3x_Contig1071 226 6e-59
3x_Contig1762 107 4e-23
3x_Contig1623 103 6e-22
>3x_Contig17
Length = 819
Score = 1205 bits (608), Expect = 0.0
Identities = 608/608 (100%)
Strand = Plus / Plus
Query: 48 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaatttatga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaatttatga 268
Query: 108 aaactgaaaagcgtcatcttgttacattgaaaatgcagtaccataacttatgagtatgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaactgaaaagcgtcatcttgttacattgaaaatgcagtaccataacttatgagtatgca 328
Query: 168 ttacctgattttgccaaaagatgacgtttaaaaattaaggttggattcactgccaactgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttacctgattttgccaaaagatgacgtttaaaaattaaggttggattcactgccaactgt 388
Query: 228 taagatcgatgttgaattatcatcaatggcaagcaaacaaagatattccaccaaataagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taagatcgatgttgaattatcatcaatggcaagcaaacaaagatattccaccaaataagg 448
Query: 288 cacttcaaaataacagttatgaaacgggtattttggttgttatgtccagttttattttta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cacttcaaaataacagttatgaaacgggtattttggttgttatgtccagttttattttta 508
Query: 348 gctccctatgttttgccgatttcacttggaacagctgataaagatggaatactgaacgta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gctccctatgttttgccgatttcacttggaacagctgataaagatggaatactgaacgta 568
Query: 408 tattttgttaagtttggttggttttggacatcggtaatatcatgcttatgtgtgataagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tattttgttaagtttggttggttttggacatcggtaatatcatgcttatgtgtgataagg 628
Query: 468 tactctaatatagtcaaccattggaaaaggtacctgctattaacgttatggtggatgata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tactctaatatagtcaaccattggaaaaggtacctgctattaacgttatggtggatgata 688
Query: 528 tttacccaagaagtatttggattgacgccgctaatggatctagtgttccttaacagcgga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttacccaagaagtatttggattgacgccgctaatggatctagtgttccttaacagcgga 748
Query: 588 ggaatttgttcatttgacatatttagtacagatggcaatgaacagacactgaatttgcaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaatttgttcatttgacatatttagtacagatggcaatgaacagacactgaatttgcaa 808
Query: 648 ttccatga 655
||||||||
Sbjct: 809 ttccatga 816
>3x_Contig1071
Length = 4881
Score = 226 bits (114), Expect = 6e-59
Identities = 154/166 (92%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 795 gaattatctgaattatccaaattggtgaagtcaagtgctggttgctcatatgctggnaga 854
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1 gaattatctgaattatccaaattggtgaagt-aagtgctggttgctcatatgctggagga 59
Query: 855 cacttggttggcngacatgatccaagtggacatatattnttgat-acacttatgcttatg 913
|||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 60 cactgggttggcggacatgatccaagtggacatatatttttgataacacttatgcttatg 119
Query: 914 tggatgtttggggaagtatcattatatcaaaatcntgcatttagac 959
| |||||||||||| ||||||||||||||| || |||||||||||
Sbjct: 120 ttgatgtttggggagttatcattatatcaaagtcgtgcatttagac 165
>3x_Contig1762
Length = 22098
Score = 107 bits (54), Expect = 4e-23
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 48 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaat 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaat 6106
>3x_Contig1623
Length = 14379
Score = 103 bits (52), Expect = 6e-22
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 48 cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccta 99
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7079 cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccta 7130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6738
Number of Sequences: 1807
Number of extensions: 6738
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 4
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)