BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA03RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1754 0.0
>3x_Contig1791
Length = 39945
Score = 1754 bits (885), Expect = 0.0
Identities = 928/940 (98%), Gaps = 2/940 (0%)
Strand = Plus / Plus
Query: 44 gcttggattggttcaaacacaaaactaaaaagaaatgaatggtattagtgcgcttgagca 103
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3269 gcttggattggttcaaacacaaaacgaaaaagaaatgaatggtattagtgcgcttgagca 3328
Query: 104 atgtttaagcctagaccccactaatcagcaggcactcatgacaatttctatcagttatat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 atgtttaagcctagaccccactaatcagcaggcactcatgacaatttctatcagttatat 3388
Query: 164 taatgagggatatgatctgaccgctttcagcatgctcaacagatggctagatagtatgta 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3389 taatgagggatatgatctgaccgctttcagcatgctcaacagatggctagatagtaagta 3448
Query: 224 ccctgagttaacacgctcccctaccattgatgaggccaatatcgataggtttaatttgag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 ccctgagttaacacgctcccctaccattgatgaggccaatatcgataggtttaatttgag 3508
Query: 284 caaacaagtaatcacgaagtatttgcaagtagctaacgccttgcctcaggtggatccaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3509 caaacaagtaatcacgaagtatttgcaagtagctaacgccttgcctcaggtggatccaga 3568
Query: 344 agttcagctcggtttgggaacgcttttctatgccaatgaagagtttggtaagacaattga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3569 agttcagctcggtttgggaacgcttttctatgccaatgaagagtttggtaagacaattga 3628
Query: 404 ctgtttccgcaccgcattagaagtcaatccaaatgacgaattaatgtggaaccgtttggg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3629 ctgtttccgcaccgcattagaagtcaatccaaatgacgaattaatgtggaaccgtttggg 3688
Query: 464 agcctctttggccaattcaaaccgtagcgaagaagctatccaggcataccacaaggccct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3689 agcctctttggccaattcaaaccgtagcgaagaagctatccaggcataccacaaggccct 3748
Query: 524 tgccttgaaaccgtcttttgtgagagctcgttataacttggccatttcgtcaatgaatat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3749 tgccttgaaaccgtcttttgtgagagctcgttataacttggccatttcgtcaatgaatat 3808
Query: 584 tggctgttataaagaggctgcagagtctctgctctctgctctatctatgcatgaagtaga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3809 tggctgttataaagaggctgcagagtctctgctctctgctctatctatgcatgaagtaga 3868
Query: 644 gaatgttccaattactggatcagtcgtgcaatctaacaatattctggagaccttaaagcg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3869 gaatgttccaattactggatcagtcgtgcaatctaacaatattctggagaccttaaagcg 3928
Query: 704 ttcctttgtcgccatggataggagagatttgctagaaaaagtcatgccgggcatggatct 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3929 ttcctttgtcgccatggataggagagatttgctagaaaaagtcatgccgggcatggatct 3988
Query: 764 acagcaatttcgtaatgagtttaacttctngatatgcaacgcagcgaatagtctttgttt 823
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3989 acagcaatttcgtaatgagtttaacttctgataatgcaacgcagcgaatagtctttgttt 4048
Query: 824 gataggaccatcctcatattcataatgaaattgatcttttcaccaagttttgcggaaaaa 883
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 4049 gataggaccatcctcatattcataatg-aattgatc-tttcaccaagttttgcggaaaaa 4106
Query: 884 tacattcgcattattaattaccagcatttagtcgcatatatgtagtcgtcattcgattgt 943
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 tacattcgcataattaattacaagcatttagtcgcatatatgtagtcgtcattcgattgt 4166
Query: 944 attcctcaacgaatagtgcagaagttcatgctcacgatca 983
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 4167 attcctcaacgaatagtgcagaggtccatgctcacgatca 4206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5907
Number of Sequences: 1807
Number of extensions: 5907
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)