BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA05FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 821 0.0
3x_Contig1651 797 0.0
3x_Contig1791 149 1e-35
3x_Contig1573 145 2e-34
3x_Contig1240 131 3e-30
3x_Contig869 131 3e-30
3x_Contig563 129 1e-29
3x_Contig1717 127 4e-29
3x_Contig1772 109 1e-23
3x_Contig278 103 6e-22
>3x_Contig1782
Length = 24703
Score = 821 bits (414), Expect = 0.0
Identities = 456/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Minus
Query: 495 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 554
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 555 caccacacatagatcc-aacaaatgggaaattaaattgtagcctttgtagcttgttaaat 613
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 614 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 674 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24523 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 24464
Query: 734 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24463 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 24404
Query: 794 gatgagtgaacggcagagcatagtatgcttcacttagcttgttcc-aaaaaaaaagt-aa 851
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 24403 gatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagtaaa 24344
Query: 852 aaaacaaatgatttcgcccagnatcgaactggggacgttctgcgtggtaagcagatgcca 911
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 24343 aaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcca 24284
Query: 912 ttaccgactagacc-cgaaaccaacttgttgaaatacgaacatat 955
| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24283 taaccgactagaccacgaaaccaacttgttgaaatacgaacatat 24239
>3x_Contig1651
Length = 13087
Score = 797 bits (402), Expect = 0.0
Identities = 409/410 (99%), Gaps = 1/410 (0%)
Strand = Plus / Plus
Query: 86 ttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12671 ttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggac 12730
Query: 146 taatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12731 taatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataag 12790
Query: 206 tttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccactataatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12791 tttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccactataatt 12850
Query: 266 cccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12851 cccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggt 12910
Query: 326 -catatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcc 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12911 gcatatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcc 12970
Query: 385 tacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12971 tacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactat 13030
Query: 445 agaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 494
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13031 agaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1791
Length = 39945
Score = 149 bits (75), Expect = 1e-35
Identities = 97/102 (95%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 841 aaaaaaagtaaaaaacaaatgatttcgcccagnatcgaactggggacgttctgcgtggta 900
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 16750 aaaaaaagtaaaaa-caaatgatttcgcccaggatcgaactggggacgttctgcgtgtta 16692
Query: 901 agcagatgccattaccgactagacc-cgaaaccaacttgttg 941
|||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 16691 agcagatgccataaccgactagaccacgaaaccaacttgttg 16650
>3x_Contig1573
Length = 10819
Score = 145 bits (73), Expect = 2e-34
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 851 aaaaacaaatgatttcgcccagnatcgaactggggacgttctgcgtggtaagcagatgcc 910
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 7045 aaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgcc 7104
Query: 911 attaccgactagacc-cgaaaccaacttgttg 941
|| |||||||||||| ||||||||||||||||
Sbjct: 7105 ataaccgactagaccacgaaaccaacttgttg 7136
>3x_Contig1240
Length = 5468
Score = 131 bits (66), Expect = 3e-30
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 850 aaaaaacaaatgatttcgcccagnatcgaactggggacgttctgcgtggtaagcagatgc 909
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1098 aaaaaacaaatgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgc 1039
Query: 910 cattaccgactagacc-cgaaacca 933
||| |||||||||||| ||||||||
Sbjct: 1038 cataaccgactagaccacgaaacca 1014
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 379 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 438
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 439 cactatagaaccga 452
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig563
Length = 1285
Score = 129 bits (65), Expect = 1e-29
Identities = 89/96 (92%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 839 aaaaaaaaagtaaaaaacaaatgatttcgcccagnatcgaactggggacgttctgcgtgg 898
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 705 aaaaaaaaattaaaaagaaaatgatttcgcccaggatcgaactggggacgttctgcgtgt 646
Query: 899 taagcagatgccattaccgactagacc-cgaaacca 933
|||||||||||||| |||||||||||| ||||||||
Sbjct: 645 taagcagatgccataaccgactagaccacgaaacca 610
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 379 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 438
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 439 cactatagaacc 450
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig1772
Length = 25851
Score = 109 bits (55), Expect = 1e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 860 tgatttcgcccagnatcgaactggggacgttctgcgtggtaagcagatgccattaccgac 919
||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 11780 tgatttcgcccaggatcgaactggggacgttctgcgtgttaagcagatgccataaccgac 11839
Query: 920 tagacc 925
||||||
Sbjct: 11840 tagacc 11845
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 379 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 434
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7660
Number of Sequences: 1807
Number of extensions: 7660
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 10
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)