BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA05RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig501 1616 0.0
>3x_Contig501
Length = 2416
Score = 1616 bits (815), Expect = 0.0
Identities = 886/904 (98%), Gaps = 6/904 (0%)
Strand = Plus / Minus
Query: 39 gcttattggtcaagagccattgttgcccaacctctgaagacctcaaaggcttatttcatc 98
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 951 gcttattggtcaagagccattgctgcccaacctctgaagacctcaaaggcttatttcatc 892
Query: 99 ggtgccgtgtcctggttcgttatcccatggactatgggtctatgtttgggtttagcagcc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ggtgccgtgtcctggttcgttatcccatggactatgggtctatgtttgggtttagcagcc 832
Query: 159 agagccacctcgattttacctggattcccaccattgagtgattctgaaatttcttctggt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 agagccacctcgattttacctggattcccaccattgagtgattctgaaatttcttctggt 772
Query: 219 ttatcagctgtggcaggtgcctctcaccttgtcggccatgcaggtactggtatgattcta 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttatcagctgtggcaggtgcctctcaccttgtcggccatgcaggtactggtatgattcta 712
Query: 279 ctcatgatctttttgtcagtgacttcctcattctctggtgagttgatcgctacttcaact 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctcatgatctttttgtcagtgacttcctcattctctggtgagttgatcgctacttcaact 652
Query: 339 ttgctatcttacgatgtttacaagaaatacattaagcaaaacgctactcctcatgaagtt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttgctatcttacgatgtttacaagaaatacattaagcaaaacgctactcctcatgaagtt 592
Query: 399 ttgctagtctctaagatcggtgtctttttctgggccatctttgctggtagtattgccagt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgctagtctctaagatcggtgtctttttctgggccatctttgctggtagtattgccagt 532
Query: 459 atcttccacagaatcggtatttctatgggttggttgtttaacttcttgggttgtgcaact 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atcttccacagaatcggtatttctatgggttggttgtttaacttcttgggttgtgcaact 472
Query: 519 gcaagtggtgttttcccagtggctttgaccttcacatggaacaggttgaacagatggggt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcaagtggtgttttcccagtggctttgaccttcacatggaacaggttgaacagatggggt 412
Query: 579 gctgtgagtggctccattggaggtatgatcttggccatcattgtgtggttagtcacttgc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gctgtgagtggctccattggaggtatgatcttggccatcattgtgtggttagtcacttgc 352
Query: 639 aaatgttacttgggcgaaatcaacgtcgataacttggccaacagatgggtttcattcgcc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaatgttacttgggcgaaatcaacgtcgataacttggccaacagatgggtttcattcgcc 292
Query: 699 ggtaacgctaccgcattgttcatgggtggcatcctatccattggtctttctttgatctgg 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggtaacgctaccgcattgttcatgggtggcatcctatccattggtctttctttgatctgg 232
Query: 759 ccagatgatttcgattgggatagcattagaaacanaactatcttaaactg-acatctaga 817
|||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 231 ccagatgatttcgattggaatagcattagaaacaaaactatctt-aactgaacatctaga 173
Query: 818 cagtgattcatcatcttcagccgctccatcaaatgttccagaggnagacaggtacgagaa 877
|||||||||||||||||||||||||||||||| ||| | ||||| |||| |||||||
Sbjct: 172 cagtgattcatcatcttcagccgctccatcaattgtacaagaggagaacagtaacgagaa 113
Query: 878 gga-ttgtacgaagtt-agggtggtgaaccgttaaatgaa--ctttactcatgagaggga 933
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 112 ggagttgtacgaagttaagggtggtgaaccgttaaatgaaacttttactcatgagaggga 53
Query: 934 cttg 937
||||
Sbjct: 52 cttg 49
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5575
Number of Sequences: 1807
Number of extensions: 5575
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)