BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1600 0.0
>3x_Contig1474
Length = 10584
Score = 1600 bits (807), Expect = 0.0
Identities = 857/869 (98%), Gaps = 5/869 (0%)
Strand = Plus / Minus
Query: 89 atttgatttcttttccaagcgagaagtacaatttttcaaaagctcatcgcatcaaaagtg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6095 atttgatttcttttccaagcgagaagtacaatttttcaaaagctcatcgcatcaaaagtg 6036
Query: 149 gtctttaggaacttgcattaaggactgtagtcattgaaacgaagtaaacgtctgtcaagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6035 gtctttaggaacttgcattaaggactgtagtcattgaaacgaagtaaacgtctgtcaagg 5976
Query: 209 tgcaaatattctttttttgcactcattgagtagttggtggagtttctatccttacaaata 268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5975 tgcaaatattctgaaactgcactcattgagtagttggtggagtttctatccttacaaata 5916
Query: 269 gccgagaagtaaaatgggtaaatcaaaaagaagatctagagcttctaatgctcgtgccaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5915 gccgagaagtaaaatgggtaaatcaaaaagaagatctagagcttctaatgctcgtgccaa 5856
Query: 329 tccattgttgagaaatgctgctaaagatgatcaaattagaactaagagaattcaaccatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5855 tccattgttgagaaatgctgctaaagatgatcaaattagaactaagagaattcaaccatt 5796
Query: 389 gatagaacagttatccagcgtgattccaaacgatagatctatagctttaggcacgattat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5795 gatagaacagttatccagcgtgattccaaacgatagatctatagctttaggcacgattat 5736
Query: 449 ggtcttatgtgaagatcctcatatgagatctcttttcctaaaggaaaaattggttaatgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5735 ggtcttatgtgaagatcctcatatgagatctcttttcctaaaggaaaaattggttaatgt 5676
Query: 509 tgttacatccaaactattgacggattccaatactgatatcgtggtagaatcttacggtgt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5675 tgttacatccaaactattgacggattccaatactgatatcgtggtagaatcttacggtgt 5616
Query: 569 tttaagaaatctagcactagaagagggctatgatttagcaacgcatatttggagattgaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5615 tttaagaaatctagcactagaagagggctatgatttagcaacgcatatttggagattgaa 5556
Query: 629 tatttgggtgaatattgagtccggtttgtcgcaagttcaacagtcactacaatcaatgaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5555 tatttgggtgaatattgagtccggtttgtcgcaagttcaacagtcactacaatcaatgaa 5496
Query: 689 atctgatgagtctaaagctaaaaaggaatctaaaaggctgttatacgattttgctgaaaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5495 atctgatgagtctaaagctaaaaaggaatctaaaaggctgttatacgattttgctgaaaa 5436
Query: 749 tatcttatcattattagtggcattagtaaacggatcggatgctatacttgatgacgtcgt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5435 tatcttatcattattagtggcattagtaaacggatcggatgctatacttgatgacgtcgt 5376
Query: 809 caagacagataaattggataaagtgttcgctgttatgactaatattttgagttacggnat 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5375 caagacagataaattggataaagtgttcgctgttatgactaatattttgagttacggtat 5316
Query: 869 ggtaatttctgat-ataccgtgactttgaaaac-actacacagttattcaacactgtctt 926
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5315 ggtaatttctgataataccgtgactttgaaaacaactacacagttattcaacactgtctt 5256
Query: 927 ggnaccttatt--agacatatctagtgat 953
|| |||||||| |||||||||||||||
Sbjct: 5255 gg-accttatttatgacatatctagtgat 5228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7541
Number of Sequences: 1807
Number of extensions: 7541
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)