BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA06RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1626 0.0
>3x_Contig1668
Length = 13429
Score = 1626 bits (820), Expect = 0.0
Identities = 895/914 (97%), Gaps = 5/914 (0%)
Strand = Plus / Minus
Query: 40 acaaccttcttacactagcggcgacgatttaatcgaggtcatcagggattcagtgccaag 99
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8012 acaagcttcttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaag 7953
Query: 100 tgctgttgcagctccaggttactccagcacttggtctactgccgcaagtttatctactgg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7952 tgctgttgcagctccaggttactccagcacttggtctactgccgcaagtttatctactgg 7893
Query: 160 aggtaatatcttcacagttaccaacaatgctaatggtactgtttcgactggtacatgatt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7892 aggtaatatcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatc 7833
Query: 220 ttcatgctccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttc 279
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7832 ttcaggctccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttc 7773
Query: 280 aaaaaaagaaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7772 aaaaaaagaaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtct 7713
Query: 340 acttctaagtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7712 acttctaagtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaat 7653
Query: 400 aaaagcaaaagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7652 aaaagcaaaagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatca 7593
Query: 460 gaggaacttcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7592 gaggaacttcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgt 7533
Query: 520 cttaatttagcacattttcggttctttgtcagatcaaagattctattgccaatagaaacc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7532 cttaatttagcacattttcggttctttgtcagatcaaagattctattgccaatagaaacc 7473
Query: 580 ctttcactgcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacaga 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7472 ctttcactgcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacaga 7413
Query: 640 aagcctataatcagaatttcttttaacaccctagttaattcaatttctcacataagcata 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7412 aagcctataatcagaatttcttttaacaccctagttaattcaatttctcacataagcata 7353
Query: 700 ctctctatcaagaatattgttcaacttaccctcgaactatttcgacaggtcgagcatttt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7352 ctctctatcaagaatattgttcaacttaccctcgaactatttcgacaggtcgagcatttt 7293
Query: 760 atattgatcaattgattccgataatttgtttgagtgaac-aaaatccc-accaagaga-g 816
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct: 7292 atattgatcaattgattccgataatttgtttgagtgaacaaaaatcccaaccaagagacg 7233
Query: 817 gacactatcttaattaaactncatcagccccttgtccagccaatatttacagntctatgt 876
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 7232 gacactatcttaattaaactcaatcagccccttgtccagccaatatttacagttctatgt 7173
Query: 877 atctctttttagaattataggttttttctgta-cactattagcacattaaatttacattg 935
||||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||||||
Sbjct: 7172 atctcttttaagaattatagg-tttttctgtaccactataagcacataaaatttacattg 7114
Query: 936 ctgttaccccgtga 949
|||| |||||||||
Sbjct: 7113 ctgtaaccccgtga 7100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,483
Number of Sequences: 1807
Number of extensions: 10483
Number of successful extensions: 143
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)