BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA07RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1707 0.0
>3x_Contig1648
Length = 16375
Score = 1707 bits (861), Expect = 0.0
Identities = 907/918 (98%), Gaps = 4/918 (0%)
Strand = Plus / Plus
Query: 44 gcttcacccttctcgttgacatctgcgacacctttagggaaacatttcacaaatttcttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12025 gcttcacccttctcgttgacatctgcgacacctttagggaaacatttcacaaatttcttg 12084
Query: 104 gcatcatcaccggtgataggctgtgtgatctggatgtgtggtaatagtctataactagct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12085 gcatcatcaccggtgataggctgtgtgatctggatgtgtggtaatagtctataactagct 12144
Query: 164 gtcgacaccggagagaacttggcatggtctgcaccgatacctagaatacaatgtgccctt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12145 gtcgacaccggagagaacttggcatggtctgcaccgatacctagaatacaatgtgccctt 12204
Query: 224 aacgaaatctcttgacctggtctcaacttggccaacaagatatctggatccgctgccacc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12205 aacgaaatctcttgacctggtctcaacttggccaacaagatatctggatccgctgccacc 12264
Query: 284 acgggacacttggcaaattgttccacctgtttcccctgaggctcaaacttaaggtcccta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12265 acgggacacttggcaaattgttccacctgtttcccctgaggctcaaacttaaggtcccta 12324
Query: 344 gcatagatatgcgcgtttctataaagaaccttggggtcttcacaatcctttggagcatct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12325 gcatagatatgcgcgtttctataaagaaccttggggtcttcacaatcctttggagcatct 12384
Query: 404 gggttcctggtacatttcacgttcaacgacatcactatcgtattttcatctgtaaacctt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12385 gggttcctggtacatttcacgttcaacgacatcactatcgtattttcatctgtaaacctt 12444
Query: 464 tcagattcgggcaatgacgtgtccacccaactcaacatatctggatccaccttcaatggc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12445 tcagattcgggcaatgacgtgtccacccaactcaacatatctggatccaccttcaatggc 12504
Query: 524 actaacccgattctatgcgccaacacttcgtcctgtagcacagacgtattgttaaaaaag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12505 actaacccgattctatgcgccaacacttcgtcctgtagcacagacgtattgttaaaaaag 12564
Query: 584 tagacgtattctggagcgacagatggtacttctgagatcataatacgacggaaagcgtta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12565 tagacgtattctggagcgacagatggtacttctgagatcataatacgacggaaagcgtta 12624
Query: 644 gcaatcgatgtgtcgacatgaaccaaatcgaaattcacttcacgctcatccaaactctcg 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12625 -caatcgatgtgtcgacatgaaccaaatcgaaattcacttcacgctcatccaaactctcg 12683
Query: 704 atttgtacgtcaaaagtttccttgaacttctccaagtcccatgaattgtcttgatccgaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 atttgtacgtcaaaagtttccttgaacttctccaagtcccatgaattgtcttgatccgaa 12743
Query: 764 ctaaatccagggaaatctgttgaacttgtgttcgtcacacggttatattcaacaccaacg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 ctaaatccagggaaatctgttgaacttgtgttcgtcacacggttatattcaacaccaacg 12803
Query: 824 atattggacatcctttttcaa-tgnattgctacngttatgctacctcttgagctctc-aa 881
||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||
Sbjct: 12804 atattggacatcctttttcaattgtattgctacgtttatgctacctcttgagctctcaaa 12863
Query: 882 cgacctcanaaaag-cctttgacactggtcagggtccgtctcatcggtgtagataactca 940
|||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 12864 cgacctcagaaaagccctatgacactggtcaaggtccgtctcatcggtgtagatacctca 12923
Query: 941 tctcaagctcatctcatc 958
||||||||||||||||||
Sbjct: 12924 tctcaagctcatctcatc 12941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5755
Number of Sequences: 1807
Number of extensions: 5755
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)