BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZA09FM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig534                                                          765   0.0  

>3x_Contig534 
          Length = 2494

 Score =  765 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Minus

                                                                       
Query: 86  atgaatagcggtggtttactccatggctggtctgtatgccttatgggtttctgttaaggt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgaatagcggtggtttactccatggctggtctgtatgccttatgggtttctgttaaggt 331

                                                                       
Query: 146 tactgtgaccccgttttaccctggccattgatgtctttaagagttattatcataattaaa 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tactgtgaccccgttttaccctggccattgatgtctttaagagttattatcataattaaa 271

                                                                       
Query: 206 agaattaagatggtttatggatgactatatgagaaaaactataaggtgatgacttccatc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agaattaagatggtttatggatgactatatgagaaaaactataaggtgatgacttccatc 211

                                                                       
Query: 266 aacgttcgataacatcgtccaagttttgcctcactttacttttgttagtttccgatctga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacgttcgataacatcgtccaagttttgcctcactttacttttgttagtttccgatctga 151

                                                                       
Query: 326 ttgattcgatctttgctatgatttgagattgcacagctttcatttcccgtgggttagcat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttgattcgatctttgctatgatttgagattgcacagctttcatttcccgtgggttagcat 91

                                                                       
Query: 386 cttgccattcccttaatttgtaggtttgacccgatagatcccagtatatacctcttaccg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 90  cttgccattcccttaatttgtaggtttgacccgatagatcccagtatatacttcttaccg 31

                                         
Query: 446 tggtatatatgccgtgtcttccttcccata 475
           ||||||||||||||||||||||||||||||
Sbjct: 30  tggtatatatgccgtgtcttccttcccata 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6163
Number of Sequences: 1807
Number of extensions: 6163
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)