BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA09RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1544 0.0
>3x_Contig1782
Length = 24703
Score = 1544 bits (779), Expect = 0.0
Identities = 898/926 (96%), Gaps = 10/926 (1%)
Strand = Plus / Plus
Query: 44 gctttatccttacttggttgttttta-tgagtttttgggggctcttaacatggactagcg 102
||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 4213 gctttatccttacttggttgtttgcaatgagtttttgggg-ctcttaacatggactagcg 4271
Query: 103 acgatatttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4272 acgatatttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttcc 4331
Query: 163 aagtggtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4332 aagtggtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctg 4391
Query: 223 ctttggatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392 ctttggatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgc 4451
Query: 283 atatcatttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatgga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4452 atatcatttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatgga 4511
Query: 343 cgggaaacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 cgggaaacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaa 4571
Query: 403 ttgtgtcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4572 ttgtgtcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgc 4631
Query: 463 tcacgtaccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 tcacgtaccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttg 4691
Query: 523 tccggttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 tccggttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaag 4751
Query: 583 gtggaatcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 gtggaatcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaa 4811
Query: 643 ccgatgcagatgatgggaaacccattagattcacttatgtattatatgagaaccagagac 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 ccgatgcagatgatgggaaacccattagattcacttatgtattatatgagaaccagagac 4871
Query: 703 gttggctcggtattggctggactgccaacatgttgacttacgagagaagttcatggacag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 gttggctcggtattggctggactgccaacatgttgacttacgagagaagttcatggacag 4931
Query: 763 atgagtttttaaacgaggcaccatctccagaac-atttanactttcagaaga-gctagnn 820
||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||
Sbjct: 4932 atgagtttttaaacgaggcaccatctccagaacaatttaaacttccagaagaggctagcg 4991
Query: 821 cgtat-gcatggagaatgggtggattagacatgnagacttgacatgaccaatgattggag 879
|||| |||||||| |||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 4992 -gtatggcatggag-atgggtggataagacatggagacttgacatgaccaatga-tggag 5048
Query: 880 -cattccactctcttatacgaggccaaagactacttgctcgcctggntgcggatgatggc 938
||| | ||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 5049 ccatccaactctctagtacgaggccaaagactactgcttcgcctgg-tgcggatgatggc 5107
Query: 939 ttcattnactacgataacccatggaa 964
|||||| ||||||||||| |||||||
Sbjct: 5108 ttcatttactacgataacacatggaa 5133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5618
Number of Sequences: 1807
Number of extensions: 5618
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)