BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA11FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig872 1620 0.0
>3x_Contig872
Length = 3350
Score = 1620 bits (817), Expect = 0.0
Identities = 857/868 (98%), Gaps = 2/868 (0%)
Strand = Plus / Plus
Query: 86 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 2356
Query: 146 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 2416
Query: 206 gaagattntaa-ctatggaatttctcctggatgaagatgcactagtattttcgcttgttt 264
||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 gaagattagaaacgagggaatttctcctggatgaagatgcactagtattttcgcttgttt 2476
Query: 265 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 2536
Query: 325 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 2596
Query: 385 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 2656
Query: 445 aggccgataatgcagctgatgaagcatttcgcagtactttgggtggtaccggtgtctgta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 aggccgataatgcagctgatgaagcatttcgcagtactttgggtggtaccggtgtctgta 2716
Query: 505 gttgagatttctgaggaattagtttcttagcttcgtcgatattaacaaaagtatgaggct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 gttgagatttctgaggaattagtttcttagcttcgtcgatattaacaaaagtatgaggct 2776
Query: 565 catcagaatcgctcaaaagtgaaggattattgatcataatttcaatggaccgtttcaata 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 catcagaatcgctcaaaagtgaaggattattgatcataatttcaatggaccgtttcaata 2836
Query: 625 tcgttagccgtaccgacaacgagtaaggtgataatgggttgtacgaatatgcatgtgttg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 tcgttagccgtaccgacaacgagtaaggtgataatgggttgtacgaatatgcatgtgttg 2896
Query: 685 aagaatttgggaacctcaggagttctctaatatcagaatctgtgaaaatagaaccgttag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 aagaatttgggaacctcaggagttctctaatatcagaatctgtgaaaatagaaccgttag 2956
Query: 745 acgatgacgatatggaagatatagttgatatcgtcgatgatttcctcaattggttaattg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 acgatgacgatatggaagatatagttgatatcgtcgatgatttcctcaattggttaattg 3016
Query: 805 gttctggctggtcaataatgtcactggtagtcggaagcctcg-aaatgatgctaaactct 863
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3017 gttctggctgttcaataatgtcactggtagtcggaagcctcgaaaatgatgctaaactct 3076
Query: 864 gtgtatcatcatctgcagaagataactcttgccttgaagtgccagtggcggcacgtttaa 923
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3077 gtgtatcatcatctgcagaagataactctgccgttgaagtgccagtggcggcacgtttaa 3136
Query: 924 aacttgaaatggaagacactggtgttga 951
|||||||| |||||||||||||||||||
Sbjct: 3137 aacttgaagtggaagacactggtgttga 3164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7122
Number of Sequences: 1807
Number of extensions: 7122
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)