BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1158 583 e-166
3x_Contig1557 450 e-126
>3x_Contig1158
Length = 4503
Score = 583 bits (294), Expect = e-166
Identities = 334/347 (96%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 566 caaattttcaatcatcttcttaccagcttcataaagcattttctgttcagcttgggtgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4503 caaattttcaatcatcttcttaccagcttcataaagcattttctgttcagcttgggtgaa 4444
Query: 626 gacctgattcaatcttcccaacaccgctggaggttcttgatgctgaggttgctgtttatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4443 gacctgattcaatcttcccaacaccgctggaggttcttgatgctgaggttgctgtttatg 4384
Query: 686 ttgttgttgctgctgctgctgttgttgttgttgttgttgtcgtacctgttgttgctgttg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4383 ttgttgttgctgctgctgctgttgttgttgttgttgttgtcgtacctgttgttgctgttg 4324
Query: 746 nagcacttgattcatattcatcctttgattaggagattgttgcacacccattcccggttg 805
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4323 aggcacttgattcatattcatcctttgattaggagattg-tgcacacccattcccggttg 4265
Query: 806 cttgacagnaatattcatcctgttaacatttgattgttgaagcttanatttgttcaacaa 865
|| |||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4264 ctgaacagaagtattcattctgttaacatttgattgttgaagcttagatttgttcaacaa 4205
Query: 866 ttgttggggcagttgataaacttttttggtgattatcaaatcattct 912
||| ||| |||||||||||||||| |||||||| |||||||||||||
Sbjct: 4204 ttgctggtgcagttgataaactttcttggtgataatcaaatcattct 4158
>3x_Contig1557
Length = 10562
Score = 450 bits (227), Expect = e-126
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 47 tacgggatttttggtaacttctgcatttaacttcttgagagctagcatatcctgttctgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10336 tacgggatttttggtaacttctgcatttaacttcttgagagctagcatatcctgttctgt 10395
Query: 107 tggtcttggaacagaaattttggattgctgctgttgttgttgttgctgttgtggtggtgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10396 tggtcttggaacagaaattttggattgctgctgttgttgttgttgctgttgtggtggtgg 10455
Query: 167 tgatgattgctgttgcatcattggttgttggatattctgaggggtttgttgaggttgagg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10456 tgatgattgctgttgcatcattggttgttggatattctgaggggtttgttgaggttgagg 10515
Query: 227 cttcatgacaccagcgtttggaataacaggggttggtttcattccca 273
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10516 cttcatgacaccagcgtttggaataacaggggttggtttcattccca 10562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,311
Number of Sequences: 1807
Number of extensions: 14311
Number of successful extensions: 2136
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)