BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZA12FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig838 1326 0.0
>3x_Contig838
Length = 3732
Score = 1326 bits (669), Expect = 0.0
Identities = 734/750 (97%), Gaps = 5/750 (0%)
Strand = Plus / Plus
Query: 205 aacgcaggacaatttngtggggggggactattagagacctgatggccatggaaaatgtga 264
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacgcaggacaattatgaggggggggactattagagacctgatggccatggaaaatgtga 69
Query: 265 gtatgtcgttatatatgtatcatcagcccggtatatatgcgtatatatgtgtaccactgc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gtatgtcgttatatatgtatcatcagcccggtatatatgcgtatatatgtgtaccactgc 129
Query: 325 catatatatacatataaatatattgacgcgatgcctcgtgactcagttacccggataaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catatatatacatataaatatattgacgcgatgcctcgtgactcagttacccggataaga 189
Query: 385 gtttggtattccgggtaacgtccaattgtggctcgtgaacttttcccattgcaaaaatat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtttggtattccgggtaacgtccaattgtggctcgtgaacttttcccattgcaaaaatat 249
Query: 445 tagtatgtggtgtatgggttagtttcaccagcaaaacccaccctctaatctcatctcatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagtatgtggtgtatgggttagtttcaccagcaaaacccaccctctaatctcatctcatc 309
Query: 505 tcatctcatcccgtcactacacccagttctttccctaacgacgtgcagaatcataggtct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcatctcatcccgtcactacacccagttctttccctaacgacgtgcagaatcataggtct 369
Query: 565 attctagctctgctcagttaccactcggtaccaaagcgataccatttcagaaatccgctt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attctagctctgctcagttaccactcggtaccaaagcgataccatttcagaaatccgctt 429
Query: 625 agtagcccttgaggcaaatggatatttccaggtgtcaaaaagatgatatatctacgtacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtagcccttgaggcaaatggatatttccaggtgtcaaaaagatgatatatctacgtacc 489
Query: 685 tactgatgagtaattagggtccgttccaggccagcccagcacagcatgggaaacatcgag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tactgatgagtaattagggtccgttccaggccagcccagcacagcatgggaaacatcgag 549
Query: 745 aaatgagacgcattatctatcatcttttgtttaaattttcacggtctcgctcactttctc 804
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 550 aaatgagacgcattatctatcatcttttgtttaaa-tttcacggtctcgctcactttctc 608
Query: 805 aataactttcttttttatagggtgccaatcttatgtattatattgnatataattgaagga 864
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 609 aataactttcttttttatagggtgccaatcttatgtattatattgtatataattgaagag 668
Query: 865 tatactaaagaaccttttgtttg-gatgaaggctgtt-acagaagttttggtccatgtta 922
|||||||||||||| |||||||| |||| |||||||| |||| |||||||||||| ||
Sbjct: 669 tatactaaagaacc-tttgtttgagatg-aggctgttcacaggagttttggtccagtgta 726
Query: 923 atgggatcgatttcccgtggncctgtttaa 952
|||||||||||||||||||| |||||||||
Sbjct: 727 atgggatcgatttcccgtggccctgtttaa 756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7678
Number of Sequences: 1807
Number of extensions: 7678
Number of successful extensions: 569
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)