BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB02FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig439 1451 0.0
>3x_Contig439
Length = 1488
Score = 1451 bits (732), Expect = 0.0
Identities = 848/874 (97%), Gaps = 10/874 (1%)
Strand = Plus / Minus
Query: 85 cgatatccttgtgttccttagccattctcttcaacttccattttctgttcttctttgtct 144
|||||||||||||| |||||||||| ||||||| ||||||||| |||| || ||||||||
Sbjct: 1477 cgatatccttgtgt-ccttagccat-ctcttca-cttccattt-ctgtgct-ctttgtct 1423
Query: 145 ttctttgatatagtttcttgattagaacgatgtctggcacgtaatcaatatttaaaccat 204
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 ctctt-gatatagtttcttgattagaacgatgtctggcacgtaatcaatatttaaaccat 1364
Query: 205 cgaagagcttttttttatagttagagttagcgataaagtaacccatgacactgtcaccag 264
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 cgaagagctctgagttatagttagagttagcgataaagtaacccatgacactgtcaccag 1304
Query: 265 gatgaataataccaccaagatgtgttctaacgtaatagacttggtcattggagcctagat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 gatgaataataccaccaagatgtgttctaacgtaatagacttggtcattggagcctagat 1244
Query: 325 cggaagatctagcgacagtaacgtcagccaatacccatttgtttctaacttgaccagtag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 cggaagatctagcgacagtaacgtcagccaatacccatttgtttctaacttgaccagtag 1184
Query: 385 gttcaacgtccaatatgatgaattcaactagttgggacacttcagctaatgcactgaaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 gttcaacgtccaatatgatgaattcaactagttgggacacttcagctaatgcactgaaag 1124
Query: 445 gttcacgccagtacattggagcagtcaaatcacacgtttgaagagtggttggatccagga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 gttcacgccagtacattggagcagtcaaatcacacgtttgaagagtggttggatccagga 1064
Query: 505 actggagagagttagaaaccttggaacagatgacaaattgactgatgttacccaaagact 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 actggagagagttagaaaccttggaacagatgacaaattgactgatgttacccaaagact 1004
Query: 565 tggcaagcttcttaggtaaaacaaccaaatcatctctacaaattggaacaatttccacgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tggcaagcttcttaggtaaaacaaccaaatcatctctacaaattggaacaatttccacgg 944
Query: 625 aaaaagtgaatttgtaagtagatgaaccggtatggatatcttgagagattaactcctcgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aaaaagtgaatttgtaagtagatgaaccggtatggatatcttgagagattaactcctcgg 884
Query: 685 attttttacatttgataggtacgacagcatttaagaaatccaacatcttagcagcatggt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 attttttacatttgataggtacgacagcatttaagaaatccaacatcttagcagcatggt 824
Query: 745 tcttttgagaatagaagaaatctaaaccatcctttgcctcactaatggaaatggtgtcaa 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tcttttgagaatagaagaaatctaaaccatcctttgcctcactaatggaaatggtgtcaa 764
Query: 805 catgggcattgtgcttc-aaatcaactgttcttaataccagannagtctcttatgaggaa 863
||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||| |
Sbjct: 763 catgggcattgtgcttcaaaatcaactgttctaaatacaagaaagttctcttatgagg-a 705
Query: 864 actttttgtctaattgggacgtttgctctccatgtattagtggtattagatcttagcaca 923
||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 704 actttttgtctaatttggacgtttgctctccatgtattagtggtataagatc-tagcaca 646
Query: 924 gtcc-gacattgcatgggcatcaccacatattcc 956
|||| |||||||||||| |||||||||||||||
Sbjct: 645 gtccggacattgcatggcaatcaccacatattcc 612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7087
Number of Sequences: 1807
Number of extensions: 7087
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)