BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB02RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1657 0.0
>3x_Contig1801
Length = 57606
Score = 1657 bits (836), Expect = 0.0
Identities = 908/923 (98%), Gaps = 7/923 (0%)
Strand = Plus / Minus
Query: 50 gctttaatacctgcatcttgcacatttttaatggtttgcaatctatcgtcatatgatctg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14052 gctttaatacctgcatcttgcacatttttaatggtttgcaatctatcgtcatatgatctg 13993
Query: 110 gtagagatcacctttgggtaatgttccctcgaggtatcgatgttatggttataagcagtc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13992 gtagagatcacctttgggtaatgttccctcgaggtatcgatgttatggttataagcagtc 13933
Query: 170 aaaccatcgtccttcaactgtt-cgcttgagttt-atccaccattcccaatg-catgttg 226
|||||| ||||||||||||||| ||||||||||| ||||||||||||||||| || | |
Sbjct: 13932 aaaccagcgtccttcaactgtttcgcttgagtttcatccaccattcccaatgtcacgcag 13873
Query: 227 gattccatccccatctcgttaatctttccaatcatttctccaatccttttcaatgcagat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13872 gattccatccccatctcgttaatctttccaatcatttctccaatccttttcaatgcagat 13813
Query: 287 tttctaccacgcatttctctccaagcagcaccaagacaaaatctcgtcgacccattttct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13812 tttctaccacgcatttctctccaagcagcaccaagacaaaatctcgtcgacccattttct 13753
Query: 347 ttggcaatttgtgcctccttgatcacttcttcgacagatatcatcttctctgctttaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13752 ttggcaatttgtgcctccttgatcacttcttcgacagatatcatcttctctgctttaaga 13693
Query: 407 cctgtatcgtaacgtgaagattgcgcacaatacttacaatcttctgaacatccacctgcc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13692 cctgtatcgtaacgtgaagattgcgcacaatacttacaatcttctgaacatccacctgcc 13633
Query: 467 ttgatgttcatcaatgtacacagttgcaccttggtaggatcatgccatttcctatgttgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13632 ttgatgttcatcaatgtacacagttgcaccttggtaggatcatgccatttcctatgttgt 13573
Query: 527 aattgtgcctgatgcatcaattccatcaatggcgtgtgataaatctccgctaattgttct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13572 aattgtgcctgatgcatcaattccatcaatggcgtgtgataaatctccgctaattgttct 13513
Query: 587 ttggtccacacatgctgtggttcgttcaaagatagtgcataactaattgcagaaacattt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13512 ttggtccacacatgctgtggttcgttcaaagatagtgcataactaattgcagaaacattt 13453
Query: 647 tcgccggcaacactttctttgagtgctgtggcgcctgcaccagcacgaatcaaactagtt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13452 tcgccggcaacactttctttgagtgctgtggcgcctgcaccagcacgaatcaaactagtt 13393
Query: 707 gaaaatcttctaacgaacattgcactagatacagtttactgacttgcagagtgataattc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13392 gaaaatcttctaacgaacattgcactagatacagtttactgacttgcagagtgataattc 13333
Query: 767 aatcaagagaacanattttaacaagaaatatccataactaactatatcctcgagcaaaag 826
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13332 aatcaagagaacaaattttaacaagaaatatccataactaactatatcctcgagcaaaag 13273
Query: 827 -aaatatcaatcggtccaatttcattgcttcccttttataacaggaat-agaaatagact 884
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 13272 aaaatatcaatcggtccaatttcattgcttcccttttataacaggaataagaataagact 13213
Query: 885 aatctacaattccacgtcaaaaccatttttttgatgaagcaaaatttcccaactggnaaa 944
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct: 13212 aatctacaattccacgtcaaaacca-ttctttgatgaagcaaaatttcccaactgg-aaa 13155
Query: 945 gtgggaagtgggaagttttgacg 967
|||||||||||||||||||||||
Sbjct: 13154 gtgggaagtgggaagttttgacg 13132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7134
Number of Sequences: 1807
Number of extensions: 7134
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)