BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB03FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 1306 0.0
>3x_Contig343
Length = 1398
Score = 1306 bits (659), Expect = 0.0
Identities = 665/667 (99%)
Strand = Plus / Plus
Query: 90 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 791
Query: 150 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 851
Query: 210 ccttgagattgcttaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 269
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 911
Query: 270 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 971
Query: 330 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 1031
Query: 390 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 1091
Query: 450 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 1151
Query: 510 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 1211
Query: 570 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 1271
Query: 630 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 1331
Query: 690 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 1391
Query: 750 cacattt 756
|||||||
Sbjct: 1392 cacattt 1398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7021
Number of Sequences: 1807
Number of extensions: 7021
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)