BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB03RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1084 1752 0.0
>3x_Contig1084
Length = 4569
Score = 1752 bits (884), Expect = 0.0
Identities = 932/946 (98%), Gaps = 2/946 (0%)
Strand = Plus / Plus
Query: 44 gcttgaaatcgacataaatacaccgtcacttagttcggattttcttgaagttgtaagaga 103
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 235 gcttgaaatcgacataaatacaccggcacttagttcggattttcttgaagttgtaagaga 294
Query: 104 attcaacctcagtcatcctcttgacataaatggtaaaatgagccgccaaaacaattagaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 attcaacctcagtcatcctcttgacataaatggtaaaatgagccgccaaaacaattagaa 354
Query: 164 attactagccagtattaacatctgatatgagacggctagcaccgttcaaagacttttttc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 355 attactagccagtattaacatctgatatgagacggctagcaccgttcaaagaccttgtac 414
Query: 224 aaaccaggaagattcgcaacttcaaccacgtccttcaataaaattttgggggcaagaagt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaccaggaagattcgcaacttcaaccacgtccttcaataaaattttgggggcaagaagt 474
Query: 284 cttctttttattactgggaatacaacatgatccattgtgtccgtaagttcattcatttca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cttctttttattactgggaatacaacatgatccattgtgtccgtaagttcattcatttca 534
Query: 344 gcagcgtatgtactgctcaaatgttctggatcattttcgtgaattttttcaattatagga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcagcgtatgtactgctcaaatgttctggatcattttcgtgaattttttcaattatagga 594
Query: 404 gggatgtaaaacaaagcgagttgtcttaatataccgtccaaacattccatctcgtcctcc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gggatgtaaaacaaagcgagttgtcttaatataccgtccaaacattccatctcgtcctcc 654
Query: 464 caattcacttgtgtccctaatctatataggaaaaaaggaagttttgaaagcggtgggtta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caattcacttgtgtccctaatctatataggaaaaaaggaagttttgaaagcggtgggtta 714
Query: 524 taatctttgagtaaaaggggaatactcttaattcgtgccttgttccaaccaccgtcattt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 taatctttgagtaaaaggggaatactcttaattcgtgccttgttccaaccaccgtcattt 774
Query: 584 gtctcgatttcaatagagaagtattcattcatcatctctttcatactagtaagcttttcg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gtctcgatttcaatagagaagtattcattcatcatctctttcatactagtaagcttttcg 834
Query: 644 ataatctcctgtatcgtttctattctcaaggtgtcaatattttccagtatctttgtaatg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ataatctcctgtatcgtttctattctcaaggtgtcaatattttccagtatctttgtaatg 894
Query: 704 ttgaacccggcttcagtttcatcttcatcaaagagcatgattttcccaaagttggaaaaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ttgaacccggcttcagtttcatcttcatcaaagagcatgattttcccaaagttggaaaaa 954
Query: 764 tctgataagccgatctggtagaatagttcattgcaaatgctcccgtagtcaaccaagaat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tctgataagccgatctggtagaatagttcattgcaaatgctcccgtagtcaaccaagaat 1014
Query: 824 agtttgagatcacactgaatagacgctaacctccttgtctcgtcaacaatgccaacataa 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 agtttgagatcacactgaatagacgctaacctccttgtctcgtcaacaatgccaacataa 1074
Query: 884 gttaagttagcanaaatgtttgtaagttctgattggctctgctcattcacggggctgttt 943
|||||||||||| ||||||||||||||||||| ||||||||||||| ||| || ||||||
Sbjct: 1075 gttaagttagcaaaaatgtttgtaagttctgaatggctctgctcatccac-ggcctgttt 1133
Query: 944 gag-ttttttatgctggggtaattcacttgcactctntgtttagga 988
||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 1134 gagtttttttatgctggttaaattcacttgcactctttgtttagga 1179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7855
Number of Sequences: 1807
Number of extensions: 7855
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)