BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB04RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1590 0.0
>3x_Contig1653
Length = 14012
Score = 1590 bits (802), Expect = 0.0
Identities = 836/847 (98%), Gaps = 1/847 (0%)
Strand = Plus / Minus
Query: 62 tccaacgctccagaatcctatttagtatacaaaacgacagataaatatatagaggtatga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12977 tccaacgctccagaatcctatttagtatacaaaacgacagataaatatatagaggtatga 12918
Query: 122 agtccactgagttttaacggactgcagcttataacgatagaatacaacagaaagtaagga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12917 agtccactgagttttaacggactgcagcttataacgatagaatacaacagaaagtaagga 12858
Query: 182 ataccttttgatgatgtatacttgtatgtaataagacggaataaaacaaaatgaaaatga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12857 ataccttttgatgatgtatacttgtatgtaataagacggaataaaacaaaatgaaaatga 12798
Query: 242 aaatgaagatgaaggggatttacaacggcctttaaatcaaaggatcatattattcaaaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12797 aaatgaagatgaaggggatttacaacggcctttaaatcaaaggatcatattattcaaaaa 12738
Query: 302 aggaagcaacctaagaaaatcgaacggagaaacaaaaaacatgaagacgagaacaattat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12737 aggaagcaacctaagaaaatcgaacggagaaacaaaaaacatgaagacgagaacaattat 12678
Query: 362 ctggttacacatgctgacagaattagataagaggccataaagcacaaacataggcattgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12677 ctggttacacatgctgacagaattagataagaggccataaagcacaaacataggcattgg 12618
Query: 422 aatgacacataattagaaagaaacaatgccgatgctcttcgatcaatgtgtgctatgccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12617 aatgacacataattagaaagaaacaatgccgatgctcttcgatcaatgtgtgctatgccc 12558
Query: 482 tctatgatatttaagaccattcaaattcttatatctctttccacagacttcacagcggta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12557 tctatgatatttaagaccattcaaattcttatatctctttccacagacttcacagcggta 12498
Query: 542 aggtttgtcattttccatacccattccatcaggataaggttcattagattctggatctat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12497 aggtttgtcattttccatacccattccatcaggataaggttcattagattctggatctat 12438
Query: 602 tatgctgaaagtgccatctgggttttcatgtaatttttggttctgatgaccatgcagttt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12437 tatgctgaaagtgccatctgggttttcatgtaatttttggttctgatgaccatgcagttt 12378
Query: 662 gtgatacttcaaaccattttgattcttgtacgtcttgtcacatcctatcactggacattt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12377 gtgatacttcaaaccattttgattcttgtacgtcttgtcacatcctatcactggacattt 12318
Query: 722 gaacgggttatgctcctcgtgatccatcacgtanagtcttctagctggatcatcaatgta 781
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12317 gaacggtttatgctcctcgtgatccatcacgtaaagtcttctagctggatcatcaatgta 12258
Query: 782 accccctgtgtttctactggacaaaacg-tatcttcatcatcatgatcatctncatcatc 840
|||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 12257 accctgttgttttctactggacaaaacgttatcttcatcatcatgatcatcttcatcatc 12198
Query: 841 ttcatcttcatcgacaacttcatcgncatcatcatcatctttaccaataactaccccgga 900
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 12197 ttcatcttcatcgacaacttcatcgtcatcatcatcatcttcaccaataactaccccgga 12138
Query: 901 ttcatga 907
|||||||
Sbjct: 12137 ttcatga 12131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8931
Number of Sequences: 1807
Number of extensions: 8931
Number of successful extensions: 163
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)