BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB05FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig724 1629 0.0
>3x_Contig724
Length = 2144
Score = 1629 bits (822), Expect = 0.0
Identities = 861/868 (99%), Gaps = 5/868 (0%)
Strand = Plus / Plus
Query: 87 ccgataaacttgctgccaaatcatgtgcaatcattgccggttctcaagtaaaatacgcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccgataaacttgctgccaaatcatgtgcaatcattgccggttctcaagtaaaatacgcat 793
Query: 147 ccggagcagtattctatccattccaacagaacaatgatatgtactatctcactggctgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ccggagcagtattctatccattccaacagaacaatgatatgtactatctcactggctgga 853
Query: 207 atgaacctgattctgtcatgataatcgagaaaccaaacaacaatcccgaagatgtagtgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atgaacctgattctgtcatgataatcgagaaaccaaacaacaatcccgaagatgtagtgc 913
Query: 267 tacatatgatggttcctccaaaggatccttttgctgagaaatgggaagggttccgcaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tacatatgatggttcctccaaaggatccttttgctgagaaatgggaagggttccgcaccg 973
Query: 327 gagttgatggtgttaaagaaatatttaatgctgacgaagcgaccagcaacaaaaatttag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gagttgatggtgttaaagaaatatttaatgctgacgaagcgaccagcaacaaaaatttag 1033
Query: 387 agcgctacatatgcaatatcattaggagatgtgattatgtctactttgatcatactaagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 agcgctacatatgcaatatcattaggagatgtgattatgtctactttgatcatactaagg 1093
Query: 447 atgcaaagaattcgacagctttcttcagcagtttcttctctatgaatgataataatcaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 atgcaaagaattcgacagctttcttcagcagtttcttctctatgaatgataataatcaaa 1153
Query: 507 aagagcttacgatattgaacttaatcaaaaatacgaccccttcgagacagttgagacctc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 aagagcttacgatattgaacttaatcaaaaatacgaccccttcgagacagttgagacctc 1213
Query: 567 tcaaaggaattgtagctgagcttagaagtacaaaatctcccgcagaattgcgtatcatga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcaaaggaattgtagctgagcttagaagtacaaaatctcccgcagaattgcgtatcatga 1273
Query: 627 ggagagccggccaaatttccgggagagcttacaatcaagcgtacgctcgaaggttcagaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 ggagagccggccaaatttccgggagagcttacaatcaagcgtacgctcgaaggttcagaa 1333
Query: 687 atgaaagaacgttgggatccttcctagaatacaagtttatcgaaggtggttgtgatcgtt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 atgaaagaacgttgggatccttcctagaatacaagtttatcgaaggtggttgtgatcgtt 1393
Query: 747 cagcgtatattccagtaatcggaactggggacaacgcattatgcattcattatactagaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 cagcgtatattccagtaatcggaactggggacaacgcattatgcattcattatactagaa 1453
Query: 807 atgacgatgntatgttcgacgatgaaatggtgcttgtagatgcagcaggtgccatangtg 866
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1454 atgacgatgttatgttcgacgatgaaatggtgcttgtagatgcagcaggtgccataggtg 1513
Query: 867 gatactgttctgatatctcaag-acatggccagtatctggtaaattt-cagatgccc-aa 923
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct: 1514 gatactgttctgatatctcaagaacatggccagtatctggtaaatttacagatgcccaaa 1573
Query: 924 aaga-ttatacgaag-tgtcctagcggt 949
|||| |||||||||| ||||||||||||
Sbjct: 1574 aagatttatacgaagttgtcctagcggt 1601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6041
Number of Sequences: 1807
Number of extensions: 6041
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)