BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB05RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1742 0.0
>3x_Contig1666
Length = 16162
Score = 1742 bits (879), Expect = 0.0
Identities = 913/921 (99%), Gaps = 3/921 (0%)
Strand = Plus / Plus
Query: 41 gcttcttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttct 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 gcttcttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttct 2058
Query: 101 tagctatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatatt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 tagctatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatatt 2118
Query: 161 atagtaagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggaggatctgt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2119 atagtaagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggaggaactgt 2178
Query: 221 aatatctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 aatatctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatg 2238
Query: 281 tgctccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcattt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tgctccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcattt 2298
Query: 341 gtgtttctttttgacaaatttcacggtataaatggataaagaggttacaatcacaggaaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 gtgtttctttttgacaaatttcacggtataaatggataaagaggttacaatcacaggaaa 2358
Query: 401 aaaacgatatacatcacgaaaataggtggtagactactttaactggtctcaatcattgca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 aaaacgatatacatcacgaaaataggtggtagactactttaactggtctcaatcattgca 2418
Query: 461 taatattcttcagcttgacactactggtcgcctcaaaaattggcatcgaaccagcttctt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 taatattcttcagcttgacactactggtcgcctcaaaaattggcatcgaaccagcttctt 2478
Query: 521 attaccactttttacttatccaggcatagattctccatataaaattccatttcacactat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 attaccactttttacttatccaggcatagattctccatataaaattccatttcacactat 2538
Query: 581 cctttgtaggggaaacttcgaaaaaaccttgaaaaaaagtcataaaagaatttaagtagg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 cctttgtaggggaaacttcgaaaaaaccttgaaaaaaagtcataaaagaatttaagtagg 2598
Query: 641 agtacttgatacgtgttttaagttggaagagggttcactggaggaatcaagtctcgaatt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 agtacttgatacgtgttttaagttggaagagggttcactggaggaatcaagtctcgaatt 2658
Query: 701 gaattgataacagtttaaaccgtattattcgaggatattacactggaaaaaatgatctcc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 gaattgataacagtttaaaccgtattattcgaggatattacactggaaaaaatgatctcc 2718
Query: 761 aagttgttcaggctattttgtgccgttttcgtacttgctagtgttactgccggtgcgctc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 aagttgttcaggctattttgtgccgttttcgtacttgctagtgttactgccggtgcgctc 2778
Query: 821 gtttgagatttcnagactttatatgaaccaaatncaccggtgacaaagagagtcttgttt 880
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2779 gttgaagatttcaagactttatatgaaccaaatccaccggtgacaaagagagtcttgttt 2838
Query: 881 ggtatcaactatacagatccccagcacgaa-cagccaaaggccgtagatgtgggtattga 939
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2839 ggtatcaactatacagat-cccagcacgaaccagccaaaggccgtagatgtgggtattga 2897
Query: 940 attgtat-gtaccgtagtacc 959
||||||| |||||||||||||
Sbjct: 2898 attgtatggtaccgtagtacc 2918
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6828
Number of Sequences: 1807
Number of extensions: 6828
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)