BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB06FM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig197 1564 0.0
>3x_Contig197
Length = 1712
Score = 1564 bits (789), Expect = 0.0
Identities = 863/878 (98%), Gaps = 8/878 (0%)
Strand = Plus / Minus
Query: 87 tatattattgatgtttcgcaatccgtacaaccagaacatcctatgtctctagatttccta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 tatattattgatgtttcgcaatccgtacaaccagaacatcctatgtctctagatttccta 1417
Query: 147 agaatggatattaagaatgttaactcatatttccaaaaattgggaattgacattttccct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 agaatggatattaagaatgttaactcatatttccaaaaattgggaattgacattttccct 1357
Query: 207 gaacgggtgatctttcatttcatcatcagtgaggtcttagacaaattcaagggtgattac 266
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 gaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcaagggtgattac 1297
Query: 267 agatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgactgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 agatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgactgat 1237
Query: 327 gaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttgggtggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 gaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttgggtggt 1177
Query: 387 ttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatcatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 ttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatcatta 1117
Query: 447 attgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatgaactc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 attgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatgaactc 1057
Query: 507 tcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgtaacg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgtaacg 997
Query: 567 gatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaactaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaactaac 937
Query: 627 gatagttctgatggtgatggatgggtctccgataaagacactccactgaaagg-aaaaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 936 gatagttctgatggtgatggatgggtctccgataaagacactccactgaaaggaaaaaaa 877
Query: 686 gtacgaagataaagatgctaaaaaacaacgtaagcaagaaacaaaagaggccaaacgtga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtacgaagataaagatgctaaaaaacaacgtaagcaagaaacaaaagaggccaaacgtga 817
Query: 746 aaagaggaagaccaaagtaaaaaaacacgttaagaaaaagctcattaacaagacgaaaag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaagaggaagaccaaagtaaaaaaacacgttaagaaaaagctcattaacaagacgaaaag 757
Query: 806 caagaaatgatcaatttaaaaattctatgcaatttcaaatatttaatatttacttagcga 865
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 756 caagaaatgatcaatttaaaaattctatgcaatgtcaaatatttaatatttacttagcga 697
Query: 866 ttttaaatagatccaccgcttttgatgttgcccctac-aga-ctgccatttncaat-atg 922
| ||||||||||||||||| |||||||||| |||||| ||| ||||||||| |||| |||
Sbjct: 696 tgttaaatagatccaccgc-tttgatgttg-ccctacaagacctgccatttccaataatg 639
Query: 923 cacgatcttct-ccatgctttg-nagntgatcttttgc 958
||||||||||| |||||||||| || |||||||||||
Sbjct: 638 cacgatcttctcccatgctttgtaagttgatcttttgc 601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9526
Number of Sequences: 1807
Number of extensions: 9526
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)