BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB06RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1760 0.0
>3x_Contig1686
Length = 15382
Score = 1760 bits (888), Expect = 0.0
Identities = 932/941 (99%), Gaps = 5/941 (0%)
Strand = Plus / Minus
Query: 44 gcttgtagaagactaaccttttattttcattgttctaattttgtaattgatngcaagcct 103
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 2356 gcttgtagaagactaaccttttatcttcattgttctaattttgtaattgat-gcaagcct 2298
Query: 104 taaaaaaatataccaaaaaacatttatatgaggaaagatgagaaggatgcttaatgaagg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 taaaaaaatataccaaaaaacatttatatgaggaaagatgagaaggatgcttaatgaagg 2238
Query: 164 tgcgcgttaagaccttcagtagtatttcaccagattacttgaatatatttaacactatat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2237 tgcgcgttaagaccttcagtagtatttcaccagattacttgaatatatttaacacta-at 2179
Query: 224 ctaggaataaagaattattgggtctttttttcctttgttacgtccttagttatttgtggc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178 ctaggaataaagaattattgggtctttttttcctttgttacgtccttagttatttgtggc 2119
Query: 284 tttgacggtttcttgaccttaacggctcctaattgtagtagaataaatgcaattgtcacg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 tttgacggtttcttgaccttaacggctcctaattgtagtagaataaatgcaattgtcacg 2059
Query: 344 ccaataataagcactatgatgccgtagtgattatctatgaattcctgatccagtactgtt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 ccaataataagcactatgatgccgtagtgattatctatgaattcctgatccagtactgtt 1999
Query: 404 aagtacttgtcatcttcagtatcaattcttggtctgtaagggacaagttttggcatttcc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 aagtacttgtcatcttcagtatcaattcttggtctgtaagggacaagttttggcatttcc 1939
Query: 464 ttagcaactctatcattacggtcgatctcaacctttcgttgtggattcgtaaatatttca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 ttagcaactctatcattacggtcgatctcaacctttcgttgtggattcgtaaatatttca 1879
Query: 524 ggccagatatcatacgataaagatgtctcggtatctggcacttcactcttttccaaagac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 ggccagatatcatacgataaagatgtctcggtatctggcacttcactcttttccaaagac 1819
Query: 584 atataaaaaactgtatgtttcggggttggtaacgttcccataacatatctcaagtattca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 atataaaaaactgtatgtttcggggttggtaacgttcccataacatatctcaagtattca 1759
Query: 644 tcattggcttgcaacacatcttttctggtcccgatgccctctacgtattgtccttgctgc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 tcattggcttgcaacacatcttttctggtcccgatgccctctacgtattgtccttgctgc 1699
Query: 704 ggtaaaggtgggaagtctacccttagaactctagttcgggcctccacaaatggttgatac 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 ggtaaaggtgggaagtctacccttagaactctagttcgggcctccacaaatggttgatac 1639
Query: 764 ctgtctgtgacattgccacctatatctattttatcatcaatattacatttatccattgta 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 ctgtctgtgacattgccacctatatctattttatcatcaatattacatttatccattgta 1579
Query: 824 taggcgatcaattctttcgt-aatatcatcgntttggactatatcaatcttttcgaattt 882
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 1578 taggcgatcaattc-ttcgtaaatatcatcgttttggactatatcaatcttttcgaattt 1520
Query: 883 cactgtcgtggaactagttagcacatagttgnataatttgtgcatanattgcttatgctg 942
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1519 cactgtcgtggaactagttagcacatagttgtataatttgtgcatagattgcttatgctg 1460
Query: 943 cttgaaatcacttcgactt-aacctggttggtttacaaata 982
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1459 cttgaaatcacttcgacttaaacctggttggtttacaaata 1419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7169
Number of Sequences: 1807
Number of extensions: 7169
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)