BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB07FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1362 0.0
>3x_Contig1768
Length = 25668
Score = 1362 bits (687), Expect = 0.0
Identities = 706/710 (99%), Gaps = 2/710 (0%)
Strand = Plus / Plus
Query: 90 atcgataaagattcgaatactaaccgagtaagacttattgataatatttcagaggatgaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685 atcgataaagattcgaatactaaccgagtaagacttattgataatatttcagaggatgaa 24744
Query: 150 gatgctaacgacagtagctcagagaaaacgatatctcaagaggaagctccggttgattca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24745 gatgctaacgacagtagctcagagaaaacgatatctcaagaggaagctccggttgattca 24804
Query: 210 gagatattattcaaaaagaagggtagaaagaaaataaaagccattgattactctaaagtt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24805 gagatattattcaaaaagaagggtagaaagaaaataaaagccattgattactctaaagtt 24864
Query: 270 ttaaacttaataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24865 ttaaacttaataacattaaataaatgtctttatcgtgaaccgaacgatttgggattgatg 24924
Query: 330 tcagagaaagatgtggaggaacttcgattatcattagataacattaaaatctcagggaaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24925 tcagagaaagatgtggaggaacttcgattatcattagataacattaaaatctcagggaaa 24984
Query: 390 gattgtcccaaacctgtaacgaaatggtcacagcttggtttgtcctctgaaatcatggat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24985 gattgtcccaaacctgtaacgaaatggtcacagcttggtttgtcctctgaaatcatggat 25044
Query: 450 cttatctccaacgaactacagtttgtaaccctcacaccaattcaatgccaggcaataccg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25045 cttatctccaacgaactacagtttgtaaccctcacaccaattcaatgccaggcaataccg 25104
Query: 510 gctattatgtcaggcagagatgttattggtatctcaaaaactgggtcagggaaaacggtc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25105 gctattatgtcaggcagagatgttattggtatctcaaaaactgggtcagggaaaacggtc 25164
Query: 570 gcttttctcctaccacttgttagacagatcaaggctcagccacctttagctcctgatgag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25165 gcttttctcctaccacttgttagacagatcaaggctcagccacctttagctcctgatgag 25224
Query: 630 actggtcctattggtcttatattgacaccgaccagagaattggccgttcagatacaagaa 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25225 actggtcctattggtcttatattgacaccgaccagagaattggccgttcagatacaagaa 25284
Query: 690 gaggcacttanattttgtaaagggtctggcatttcaagcatctgttgcgtgggaggctcg 749
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25285 gaggcacttaaattttgtaaagggtctggcatttcaagcatctgttgcgtgggaggctcg 25344
Query: 750 gagttaaagcaacaaatcaatgaatttgaaaagaggggtgtgatatcatt 799
|||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 25345 gagttaaagcaacaaatcaatgaa-ttgaaaagaggtgt-tgatatcatt 25392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6472
Number of Sequences: 1807
Number of extensions: 6472
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)