BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB07RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig524 807 0.0
>3x_Contig524
Length = 2067
Score = 807 bits (407), Expect = 0.0
Identities = 480/497 (96%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 427 ttagatagtcaattgtcaattctataactaaaaaggatccttttcaactgaattcttttt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagatagtcaattgtcaattctataactaaaaaggatccttttcaactgaattcttttt 60
Query: 487 tataatttcttgaatttgatattattttttcactgaaaaaaaataaaaactcgttctttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tataatttcttgaatttgatattattttttcactgaaaaaaaataaaaactcgttctttg 120
Query: 547 acctattcaacaaatagacgttagcctcagggaaccgctaattgagtgggattggatgag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acctattcaacaaatagacgttagcctcagggaaccgctaattgagtgggattggatgag 180
Query: 607 aatctgtagtaagatttataaaacctttaagaaattataaagtaagattaaacaagtatt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctgtagtaagatttataaaacctttaagaaattataaagtaagattaaacaagtatt 240
Query: 667 gaattacagatccatanagtataaaaaatgaaacacaaaacagaagataatacaatgaat 726
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattacagatccataaagtataaaaaatgaaacacaaaacagaagataatacaatgaat 300
Query: 727 aaaggaataacgactcttaaagactaacaacttncctggtgctgaaatgacccctctata 786
||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||
Sbjct: 301 aaaggaataacgactctaaagaactaacaacttccctggtgctgaaatgaccctcttata 360
Query: 787 tttctttatatattggntgaaatcaaaatccttttaaggaatatatatgncgctgcataa 846
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 361 tttctttatatattgg-tgaaatcaaaatcctttaaaggaatatatatg-cgctgcat-a 417
Query: 847 agcttttttttatttcgtttcgactgtacgggttcgagcgattcgcgggttgcttatacc 906
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 418 agctttttttta-ttcgtttcgactgtacggg-tcgagcgattcgcgggttgc-tatacc 474
Query: 907 gttggatttatttcata 923
|||| |||||| |||||
Sbjct: 475 gttgtatttatctcata 491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,748
Number of Sequences: 1807
Number of extensions: 10748
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)