BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB08FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig688 1439 0.0
>3x_Contig688
Length = 2555
Score = 1439 bits (726), Expect = 0.0
Identities = 812/834 (97%), Gaps = 7/834 (0%)
Strand = Plus / Plus
Query: 86 aatactcagtgcattgacgtttgttcagtactgtattgcaactgaaattgtgctaaaaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aatactcagtgcattgacgtttgttcagtactgtattgcaactgaaattgtgctaaaaga 827
Query: 146 tgcagtagtggctttcgatagtgaaaggccggttgtccaattgaataacattgacagtaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tgcagtagtggctttcgatagtgaaaggccggttgtccaattgaataacattgacagtaa 887
Query: 206 atatgattctatttgtgtaaatgtaccggtatcgttgtcagagacattgaagctttcgtt 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 atatgattctaaaggtgtaaatgtaccggtatcgttgtcagagacattgaagctttcgtt 947
Query: 266 tgttgtggaccaagagttggaacaagcaaatgttttggtaggacttccaagtgaaaactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tgttgtggaccaagagttggaacaagcaaatgttttggtaggacttccaagtgaaaactt 1007
Query: 326 ggaagctggctatactttaaagaagcaaagtgggagctctgacaaattttccttagccat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ggaagctggctatactttaaagaagcaaagtgggagctctgacaaattttccttagccat 1067
Query: 386 tcctctaccaaaacttgcacatgccttcaacgatagagcagagctacaagtgaacctttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tcctctaccaaaacttgcacatgccttcaacgatagagcagagctacaagtgaacctttt 1127
Query: 446 agtatccacagaagaaaattcattggttaaggaattattcatattgtccattgttgatcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 agtatccacagaagaaaattcattggttaaggaattattcatattgtccattgttgatcc 1187
Query: 506 tgtaacaaatacccgtgatactgcgagaaactttgttagattgaatccgaaggaggaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 tgtaacaaatacccgtgatactgcgagaaactttgttagattgaatccgaaggaggaaat 1247
Query: 566 tcatcacattttccaaagttcacctaagaccgtcaatgcgttcatcgctcaactgtttgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tcatcacattttccaaagttcacctaagaccgtcaatgcgttcatcgctcaactgtttgc 1307
Query: 626 attggtaattactaccactttattcgtgttgtttgtctcctgggtatctttcggtgctgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 attggtaattactaccactttattcgtgttgtttgtctcctgggtatctttcggtgctgt 1367
Query: 686 taatt-caacttgaaga-tgtatcttcgtacttatttgttgcactagtttccggtttcga 743
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 taatttcaacttgaagaatgtatcttcgtacttatttgttgcactagtttccggtttcga 1427
Query: 744 gttcatct-ctaca-gtactattncggtacctcaatatttgacaccgnattctctactgg 801
|||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1428 gttcatcttctacaagtactattccggtacctcaatatttgacaccgtattctctactgg 1487
Query: 802 tttgttgntctttacagctttgttgcttggttctgctactctggaatcattgaaacaatg 861
||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1488 tttgttgttcttaccagctttgttgcttggttctgctactctgaagtcattgaaacaatg 1547
Query: 862 atgatcttcgacagttctaa-ttccgcatt--aataaccggtaaatagttcgaa 912
||||||||||||| ||| | ||||||| | |||| |||||||||||||||||
Sbjct: 1548 atgatcttcgacaagtcttagttccgcaattaaatagccggtaaatagttcgaa 1601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6504
Number of Sequences: 1807
Number of extensions: 6504
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)