BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB08RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1078 682 0.0
3x_Contig901 317 2e-86
>3x_Contig1078
Length = 3134
Score = 682 bits (344), Expect = 0.0
Identities = 383/396 (96%)
Strand = Plus / Plus
Query: 42 gctttctcttcttctactgaagatttaccctatggataccattgacaacttttaaaggat 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2445 gctttctcttcttctactgaagatttaccctatggataccattgacaacttttaaaggat 2504
Query: 102 gtctgatattgttttttaaatgtcaaatttaatggacagacaatgatagatcatcgtgag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2505 gtctgatattgttttttaaatgtcaaatttaatggacagacaatgatagatcatcgtgag 2564
Query: 162 tggaaattcacaaagaaaagcgccacggctaaatagtacaactaaggcatttatttttta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2565 tggaaattcacaaagaaaagcgccacggctaaatagtacaactaaggcatttaatagtta 2624
Query: 222 gagtataattcccgatgattgctactctcaattttattatattccgaaagttattttctt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 gagtataattcccgatgattgctactctcaattttattatattccgaaagttattttctt 2684
Query: 282 cacctatggagtcatgttaatttaggtatcataatgagtatatagttttatagtattaca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2685 cacctatggagtcatgttaatttaggtatcataatgagtatatagttttatagtattaca 2744
Query: 342 catgccatcagagttaatcgtgaattcattacactttcattgacagattagacatggatg 401
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 2745 catgccatcagagttaatcgtgaattcattacactttcatttacagattagacatttatt 2804
Query: 402 gttctccgcgtctattaatgaaattgttaacgtcaa 437
|||||| | ||||||||| ||||| ||||| ||||
Sbjct: 2805 tttctcctcttctattaatcaaatttttaacttcaa 2840
>3x_Contig901
Length = 2854
Score = 317 bits (160), Expect = 2e-86
Identities = 237/255 (92%), Gaps = 7/255 (2%)
Strand = Plus / Minus
Query: 684 atactccatacccgtatgcttctaagattgcagcagttccgcccacc-anaaactgtagc 742
|||||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 2854 atactccatacccgtatgct-ctaagattgcagcagt-ccgccaacccaaaaactgtagc 2797
Query: 743 aaccatctgtaagtttattgcttcttncgtttaa-cctttcttctctttagtttgacgag 801
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 2796 aaccatctgtaagtttattgcttcttccgtttaaacctttctcctctttagtttgacgag 2737
Query: 802 gactacacccatgacatta-cgcatcgatattgaccttatctaaggcattcaacattgcc 860
|||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 aactacacc-atgacaataacgcatcgatattgaccttatctaaggcattcaacattgcc 2678
Query: 861 aagctggctactgcacaaaaagtgtagccaccatttgcttcatcattggggcagnctncg 920
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||
Sbjct: 2677 aagctggctactgcacaaaaagtgtagccaccatgtgcttcatcatttgggcagcctccg 2618
Query: 921 naacccaccctcgta 935
|| |||||||||||
Sbjct: 2617 aaa-ccaccctcgta 2604
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6702
Number of Sequences: 1807
Number of extensions: 6702
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)