BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig684 1584 0.0
>3x_Contig684
Length = 2183
Score = 1584 bits (799), Expect = 0.0
Identities = 865/879 (98%), Gaps = 6/879 (0%)
Strand = Plus / Minus
Query: 44 gcttatagttcctgaatttattttcaaaagctgacatcaaaattcaaaccaatgacgatg 103
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1828 gcttatagttcctgaatttattc-caaaagctgacatcaaaattcaaaccaatgacgatg 1770
Query: 104 aaccagatccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagctt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aaccagatccaaacgcgaacaaccagcttggtggcgatgtcttagaaaacttggcagctt 1710
Query: 164 ctttgccagatgcttctaccttagctggtttccaactaatcccagttgaattttatatg- 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 1709 ctttgccagatgcttctaccttagctggtttccaactaatcccagttgaatttgaaaagg 1650
Query: 223 atgacgatacaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 atgacgatacaaaccatcatattgagttcattactgctgcatcgaacaaccgtgctctaa 1590
Query: 283 actactctatcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 actactctatcgaaccagctgatcgtcaaaagactaagttcattgctggccgtatcattc 1530
Query: 343 ctgccatcgctacaaccactgctttggttacaggattggtcaacctagaactatacaaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 ctgccatcgctacaaccactgctttggttacaggattggtcaacctagaactatacaaag 1470
Query: 403 tcgtcgctggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 tcgtcgctggaaagacagatattgaacaatacaagaacgggtttgtgaatttagctcttc 1410
Query: 463 catttttcggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 catttttcggtttctcagaaccaatcgcatcacaaaagggtaaatacaatgataagactt 1350
Query: 523 tcgataaaatatgggatagattcgatattcaaggtgatatcacattaagagagttgattg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tcgataaaatatgggatagattcgatattcaaggtgatatcacattaagagagttgattg 1290
Query: 583 atcacttcaacaaggaagaaggattggaaattacaatggtctcctacgatgtttctttac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 atcacttcaacaaggaagaaggattggaaattacaatggtctcctacgatgtttctttac 1230
Query: 643 tatacgcatcattcttccctccaaaaaaactaaaggatagaatggatcttccaataactg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tatacgcatcattcttccctccaaaaaaactaaaggatagaatggatcttccaataactg 1170
Query: 703 aggttgtaaaattagtcacgaagaaggaaatcctcagtcacgttaagaccatgattttgg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 aggttgtaaaattagtcacgaagaaggaaatcctcagtcacgttaagaccatgattttgg 1110
Query: 763 aattctgttgtgaagat-aggaaggtgaagacgtggaggttccatatgtcaccgtccatt 821
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 aattctgttgtgaagataaggaaggtgaagacgtggaggttccatatgtcaccgtccatt 1050
Query: 822 tgtaatgattctaattttgtctgataccangatgtaaa-tcgt-attttatctctatgat 879
||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||
Sbjct: 1049 tgtaatgattctaattttgtctgatacca-gatgtaaattcgtaattctatctctatgat 991
Query: 880 gctagggcttatgatataaacttacttagaagaaatcat 918
|||||| | |||||||||||||||||||||||||||||
Sbjct: 990 gctaggcttaatgatataaacttacttagaagaaatcat 952
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7246
Number of Sequences: 1807
Number of extensions: 7246
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)