BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB12FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1513 0.0
>3x_Contig1473
Length = 8041
Score = 1513 bits (763), Expect = 0.0
Identities = 859/882 (97%), Gaps = 7/882 (0%)
Strand = Plus / Plus
Query: 86 ctacatcacaacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 145
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 4517
Query: 146 caaataagatggtagaaaataccatttttgaacctaacatatatctccaaccacctttga 205
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4518 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 4577
Query: 206 catcgaagaaaaggt-accattgacataaccaaccaactcaccaagggcaatattgaatt 264
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 4637
Query: 265 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 4697
Query: 325 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 4757
Query: 385 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 4817
Query: 445 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 4877
Query: 505 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 4937
Query: 565 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 4997
Query: 625 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 5057
Query: 685 tcacttcacaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 tcacttcacaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtat 5117
Query: 745 ttgcaatttcatcttcgtacaccttaatctgtgttaagatttgatcttcactggaaaaat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5118 ttgcaatttcatcttcgtacaccttaatctgtgttaagatttgatcttcactgaaaaaat 5177
Query: 805 tattgggcgtcatcttcaccgactttcacaccggcttcaacttcgtgtaccgagtcaaca 864
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 aatt-gtcgtcatcttcaccgactttcacaccggcttcaacttcgtgtaccgagtcaaca 5236
Query: 865 gaactcgtactctttaancaagccgaattctttttggctggtcaactgccttgttcagac 924
|||||||||||| |||| ||||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 5237 gaactcgtactc-ttaagcaagccgaattcttttt-gctggtcaactg-ctttttcagac 5293
Query: 925 agaatactagcacattgtttcttaaccctttgtaatatcaac 966
||| |||||| |||||||||||||| ||||| ||||||||||
Sbjct: 5294 agattactag-acattgtttcttaa-cctttttaatatcaac 5333
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7034
Number of Sequences: 1807
Number of extensions: 7034
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)