BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZB12RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1679 0.0
>3x_Contig1749
Length = 22923
Score = 1679 bits (847), Expect = 0.0
Identities = 912/927 (98%), Gaps = 5/927 (0%)
Strand = Plus / Minus
Query: 41 gcttggatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaa 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20461 gcttggatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaa 20402
Query: 101 agagccatcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatgg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20401 agagccatcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatgg 20342
Query: 161 tgttccttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgattttttt 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20341 tgttccttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagtttt 20282
Query: 221 cataaagctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgcc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20281 cataaagctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgcc 20222
Query: 281 ttagagatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaac 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20221 ttagagatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaac 20162
Query: 341 attcaaaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattggga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20161 attcaaaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattggga 20102
Query: 401 attactagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcac 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20101 attactagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcac 20042
Query: 461 gagggcgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20041 gagggcgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagc 19982
Query: 521 ttaataggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactcta 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19981 ttaataggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactcta 19922
Query: 581 tgcctgcgtccccacaggatctttggactctatgttctttctatggctcttggattttct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19921 tgcctgcgtccccacaggatctttggactctatgttctttctatggctcttggattttct 19862
Query: 641 ttttttccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttcc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19861 ttttttccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttcc 19802
Query: 701 agattctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggttt 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 19801 agattctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttgg-tt 19743
Query: 761 tgttcttcaatttgtcctttgatttagatttagattttgagtttgcttggggaa-cacaa 819
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct: 19742 tgttcttcaatttgtccttcgatttagatttagattttgagtttgctttgggaaccacaa 19683
Query: 820 ctttttctgatccacgtagtatttc-aaaccctctttttcagttttgtttcacagggttt 878
||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct: 19682 ctttttctgatccacgtagtaattcaaaaccctctttttcagttttgttacacagggttt 19623
Query: 879 ttgttaaatcagtagtatttgcttcggtagtggggtggtcattaatagcttcgttgaagt 938
| || ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 19622 tggtaaaatcagaagtatttgcttcggtagttgggtggtcattaatagc-tcgttgaagt 19564
Query: 939 tcctttaaactttcttttacttttatt 965
|||||||||||||| ||||||||||||
Sbjct: 19563 tcctttaaactttc-tttacttttatt 19538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9460
Number of Sequences: 1807
Number of extensions: 9460
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)