BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1552 0.0
>3x_Contig1416
Length = 10161
Score = 1552 bits (783), Expect = 0.0
Identities = 829/844 (98%), Gaps = 1/844 (0%)
Strand = Plus / Plus
Query: 89 ttaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 ttaaattccaccatataacagtgggttggttggcaaaagaataacgcaaattataatcgt 5551
Query: 149 cgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtcaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 cgtggtttggggtatattgtggttggaacttgtccatgaatccaaatggaccaaagtcaa 5611
Query: 209 tagaaagacttttaattgaagtgttgtctgtattcaagacaccgttacagaacccatatg 268
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 tagaaagacctagaattgaagtgttgtctgtattcaagacaccgttacagaacccatatg 5671
Query: 269 cttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cttgccagtatgccacacactctgcattcaacgtgactatgtgtctgaataatttatcgt 5731
Query: 329 aatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatcag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 aatttgtcaaaccatcatcgacctttgacgaacgtagctctttgttgttcacagtatcag 5791
Query: 389 acgttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtctt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 acgttccttcgaaataatttgcactgaagctgtttaatgcaacagtgtctctgtagtctt 5851
Query: 449 tcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatcat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 tcaatccttcgaaaacatgattgattgaaaagtctgctaatttcaagagaccctcatcat 5911
Query: 509 cctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatctcg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 cctgtttccatctaaacaaatcaaaattaccgattcttatccaacttggtgcaaatctcg 5971
Query: 569 ttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatgaga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 ttatcacagcgcaaggctcaaaaacagatcttcttgctctagtcttcggtagcgatgaga 6031
Query: 629 tttgcaatgccctagaagacggaataccaatggcgtgcaaactctcacatatgagaaact 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tttgcaatgccctagaagacggaataccaatggcgtgcaaactctcacatatgagaaact 6091
Query: 689 ctctaatacttgatctgactacagctttcccgtcagcaaatcttgaatatgngagtaatc 748
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6092 ctctaatacttgatctgactacagctttcccgtcagcaaatcttgaatatggagttaatc 6151
Query: 749 cactcccttttaactggacggtttgcagtttagattccttatccttgatatcgaanaggt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6152 cactcccttttaactggacggtttgcagtttagattccttatccttgatatcgaaaaggt 6211
Query: 809 tgagaactctntcgtcccccaaatgtcctgcaaactcaccgaattgaaaccccgcatagg 868
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct: 6212 tgagaactcttccgtcccccaattgtcctgcaaactcaccgaattgaaacccggcataag 6271
Query: 869 cgagactataaggaaaaa-ttctctcgattcatcgatgtacacgtctgacccctggcaat 927
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6272 cgagactataaggaaaaatttctctcgattcatcgatgtacacgtctgacccctggcaaa 6331
Query: 928 tgtt 931
||||
Sbjct: 6332 tgtt 6335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5574
Number of Sequences: 1807
Number of extensions: 5574
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)