BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC02RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1317 1181 0.0
3x_Contig1598 339 6e-93
>3x_Contig1317
Length = 5616
Score = 1181 bits (596), Expect = 0.0
Identities = 663/677 (97%), Gaps = 7/677 (1%)
Strand = Plus / Minus
Query: 242 gggttgtcaattttatacattcacagctaatatatgcagtatagttaatgtagcttatca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5611 gggttgtcaattttatacattcacagctaatatatgcagtatagttaatgtagcttatca 5552
Query: 302 gtaaactcgaatctatatcctcctgcacttttctggttaagttggcctgcctgttaaagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5551 gtaaactcgaatctatatcctcctgcacttttctggttaagttggcctgcctgttaaagt 5492
Query: 362 ttcccgttttttcgttaaatgttcatgagaacgaaacagaaatttagtgcaccgtcagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5491 ttcccgttttttcgttaaatgttcatgagaacgaaacagaaatttagtgcaccgtcagaa 5432
Query: 422 tatcgtaagaaacactaataaaccaaacaaagaaattgcaatgagtactagctgttgtct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5431 tatcgtaagaaacactaataaaccaaacaaagaaattgcaatgagtactagctgttgtct 5372
Query: 482 ataaaagtatatttcgatgtaatatttatgctgtttatatattatattagcaatcgttaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5371 ataaaagtatatttcgatgtaatatttatgctgtttatatattatattagcaatcgttaa 5312
Query: 542 gggttgccaggctttctagcaactacgtaccaattatccttttcgtaaccttgtccaact 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5311 gggttgccaggctttctagcaactacgtaccaattatccttttcgtaaccttgtccaact 5252
Query: 602 attattcctccggccatttggcaatcctcttctagttccccctcgcgatatagatggtag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 attattcctccggccatttggcaatcctcttctagttccccctcgcgatatagatggtag 5192
Query: 662 taacgatacttcgtgttggattttgtctccttttcgagcttcttgcgctcttcctctatt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 taacgatacttcgtgttggattttgtctccttttcgagcttcttgcgctcttcctctatt 5132
Query: 722 tcctgctctctttttagcctgagagcttcctgttctagtttccatttgttcaaaatttca 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 5131 tcctgctctctttttagcctgagagcttcctgttctagtttccatttgttcaagaattca 5072
Query: 782 gatcttncatgtttaggnaacggtggat-aatctggctttggggacttgtattttgccct 840
|||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 5071 gatctttcatgtttagg-aacggtggataaatctggc-ttggggacttgtattttgccct 5014
Query: 841 ttttaccaaattnctcatcaatttccggnatcccccttctcgatcttgtaaaaacccacg 900
|||||||| ||| ||||||||||||| | ||||| ||||| |||||||| ||||||||||
Sbjct: 5013 ttttaccagatttctcatcaatttcc-gtatccctcttct-gatcttgt-aaaacccacg 4957
Query: 901 gtacttaaaacgtcttg 917
|||| ||||||||||||
Sbjct: 4956 gtac-taaaacgtcttg 4941
>3x_Contig1598
Length = 11902
Score = 339 bits (171), Expect = 6e-93
Identities = 195/203 (96%)
Strand = Plus / Plus
Query: 48 gctttataacattaggcaatttatcagtggggaaagacgttatcatttgaaactcgttga 107
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11700 gctttataacattaggcaattcatcagtggggaaagacgttatcatttgaaactcgttga 11759
Query: 108 gcttttgctcttctgagtgggagagttcaaatcgttgatcattatgttcaattactggca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11760 gcttttgctcttctgagtgggagagttcaaatcgttgatcattatgttcaattactggca 11819
Query: 168 ttttaaggttcgttacaaatcacagtacgctcaagcagatatactttaatttttttctca 227
||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 11820 ttttaaggttcgttacaaatcacagtacgctcaagcagatatactttccctcggatctca 11879
Query: 228 atgccaaaaatactgggttgtca 250
|||||||||||||||||||||||
Sbjct: 11880 atgccaaaaatactgggttgtca 11902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6813
Number of Sequences: 1807
Number of extensions: 6813
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)