BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC03FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1604 0.0
>3x_Contig1676
Length = 15800
Score = 1604 bits (809), Expect = 0.0
Identities = 866/879 (98%), Gaps = 5/879 (0%)
Strand = Plus / Plus
Query: 87 taatacaaaatttccagatctcttggtagtacctatatatgccaatcttcctcaagaaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10171 taatacaaaatttccagatctcttggtagtacctatatatgccaatcttcctcaagaaca 10230
Query: 147 acaatccaaaatttttgaacctacaccgaagaactgcagaaaagtagtgcttgcgacaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10231 acaatccaaaatttttgaacctacaccgaagaactgcagaaaagtagtgcttgcgacaaa 10290
Query: 207 tattgcagagacatcgttaacaattgacggcataaagttcgtggtagatccaggttttgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10291 tattgcagagacatcgttaacaattgacggcataaagttcgtggtagatccaggttttgt 10350
Query: 267 gaaggaacaatcctattcaggaggagtttcaaagctagtgacagttccatgttctagggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10351 gaaggaacaatcctattcaggaggagtttcaaagctagtgacagttccatgttctagggc 10410
Query: 327 atctgttgaccagagagcagggagagcagggagattgggtccaggcaaatgttttagatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10411 atctgttgaccagagagcagggagagcagggagattgggtccaggcaaatgttttagatt 10470
Query: 387 atttacaaaatggtcttactacaatgagcttgaaaaagtaccaaagccagagattttgag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10471 atttacaaaatggtcttactacaatgagcttgaaaaagtaccaaagccagagattttgag 10530
Query: 447 aacaaaattgaatcaagtggttctacttttgctttcactaggtatcaacgacttacttca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10531 aacaaaattgaatcaagtggttctacttttgctttcactaggtatcaacgacttacttca 10590
Query: 507 ctttccaatgttggacaaaccaaaaactatccagctaagcgaagccctcgaaaatttgta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10591 ctttccaatgttggacaaaccaaaaactatccagctaagcgaagccctcgaaaatttgta 10650
Query: 567 tgccattggcgctctcaatagcagaggtgcaatcacaaaagtaggacaagttatgtgtga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10651 tgccattggcgctctcaatagcagaggtgcaatcacaaaagtaggacaagttatgtgtga 10710
Query: 627 tttcccatgtgatcctgaatatgccaaggtaatatattctagcgtgtttgaagaaagctg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10711 tttcccatgtgatcctgaatatgccaaggtaatatattctagcgtgtttgaagaaagctg 10770
Query: 687 taatggtgttctacctgaaattgttacgattgtctctatgcttcaagagagcaactctat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10771 taatggtgttctacctgaaattgttacgattgtctctatgcttcaagagagcaactctat 10830
Query: 747 atttgtaccgggactcaattcggaagaaaagacanaactttttgggtcattgatgcagtc 806
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 10831 atttgtaccgggactcaattcggaagaaaagacaaaactttttgggtcattgatgcagtc 10890
Query: 807 aagtgaccacatgctatacttgtggatatatgaacaatgggaagagaagggatactcacg 866
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10891 aagtgaccacatgctatacttgtggatatatgaacaatgggaagagaatggatactcacg 10950
Query: 867 aagaatggtgtc-agatttcagtttgncacatataacaatgaaacgagtattgaggatac 925
||| |||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 10951 aag-atggtgtcaagatttcaagttgcaacataaaacaatgaaacgagtattgaggatac 11009
Query: 926 gac-accattatgggaaatattgta-gaaacaagatttt 962
||| || ||||| |||||||||||| |||||||||||||
Sbjct: 11010 gacaacaattat-ggaaatattgtaggaaacaagatttt 11047
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6427
Number of Sequences: 1807
Number of extensions: 6427
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)