BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC03RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig688 1663 0.0
>3x_Contig688
Length = 2555
Score = 1663 bits (839), Expect = 0.0
Identities = 907/923 (98%), Gaps = 5/923 (0%)
Strand = Plus / Plus
Query: 44 gctttcgtttgttgtggaccaagtgttggaacaagcaaatgttttggtaggacttccaag 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 939 gctttcgtttgttgtggaccaagagttggaacaagcaaatgttttggtaggacttccaag 998
Query: 104 tgaaaacttggaagctggctatactttaaagaagcaaagtgggagctctgacaaattttc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 tgaaaacttggaagctggctatactttaaagaagcaaagtgggagctctgacaaattttc 1058
Query: 164 cttagccattcctctaccaaaacttgcacatgccttcaacgatagagcagagcttttt-t 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1059 cttagccattcctctaccaaaacttgcacatgccttcaacgatagagcagagctacaagt 1118
Query: 223 gaaccttttagtatccacagaagaaaattcattggttaaggaattattcatattgtccat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 gaaccttttagtatccacagaagaaaattcattggttaaggaattattcatattgtccat 1178
Query: 283 tgttgatcctgtaacaaatacccgtgatactgcgagaaactttgttagattgaatccgaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 tgttgatcctgtaacaaatacccgtgatactgcgagaaactttgttagattgaatccgaa 1238
Query: 343 ggaggaaattcatcacattttccaaagttcacctaagaccgtcaatgcgttcatcgctca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 ggaggaaattcatcacattttccaaagttcacctaagaccgtcaatgcgttcatcgctca 1298
Query: 403 actgtttgcattggtaattactaccactttattcgtgttgtttgtctcctgggtatcttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 actgtttgcattggtaattactaccactttattcgtgttgtttgtctcctgggtatcttt 1358
Query: 463 cggtgctgttaatttcaacttgaagaatgtatcttcgtacttatttgttgcactagtttc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 cggtgctgttaatttcaacttgaagaatgtatcttcgtacttatttgttgcactagtttc 1418
Query: 523 cggtttcgagttcatcttctacaagtactattccggtacctcaatatttgacaccgtatt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 cggtttcgagttcatcttctacaagtactattccggtacctcaatatttgacaccgtatt 1478
Query: 583 ctctactggtttgttgttcttaccagctttgttgcttggttctgctactctgaagtcatt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ctctactggtttgttgttcttaccagctttgttgcttggttctgctactctgaagtcatt 1538
Query: 643 gaaacaatgatgatcttcgacaagtcttagttccgcaattaaatagccggtaaatagttc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 gaaacaatgatgatcttcgacaagtcttagttccgcaattaaatagccggtaaatagttc 1598
Query: 703 gaaatacaaaagatctatcagagccgattaacatacttctatagctacattcaatacgaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gaaatacaaaagatctatcagagccgattaacatacttctatagctacattcaatacgaa 1658
Query: 763 cataaacttctataaacattcctatttcatcattgaactttatcatttctcatcaaaata 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 cataaacttctataaacattcctatttcatcattgaactttatcatttctcatcaaaata 1718
Query: 823 gctgttagtgatttctctaaaccccc-aaaagtcgatagaggctttgctg-aatcgttcg 880
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct: 1719 gctgttagtgatttctctaaacccccaaaaagtcgatagaggc-ttgctgaaatcgttcg 1777
Query: 881 ctgctacgatctttcccttgatt-aaccctttggtatcgaattatatgtcctggagttta 939
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 1778 ctgctacgatcttccccttgattaaacccttgggtatcgaattatatgtcctggagtcta 1837
Query: 940 aactatgaaaaagaatggcccca 962
|||||||| ||||| || |||||
Sbjct: 1838 aactatgagaaagattgtcccca 1860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7641
Number of Sequences: 1807
Number of extensions: 7641
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)