BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC05FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1568 0.0
>3x_Contig1741
Length = 21706
Score = 1568 bits (791), Expect = 0.0
Identities = 827/837 (98%), Gaps = 2/837 (0%)
Strand = Plus / Minus
Query: 88 cactgaataccaaagattagcagctttctgggaaagtttggtttcgtacctgataagtgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18994 cactgaataccaaagattagcagctttctgggaaagtttggtttcgtacctgataagtgc 18935
Query: 148 tgattctttattcagtaattcattagaatatttgaaataaataaacgattgcttgtttgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18934 tgattctttattcagtaattcattagaatatttgaaataaataaacgattgcttgtttgt 18875
Query: 208 gatcggtatcactaataacttcacgggatcgttaacgtactgttgtatagttgaactctt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18874 gatcggtatcactaataacttcacgggatcgttaacgtactgttgtatagttgaactctt 18815
Query: 268 gttataagcctttgaatatgctgaaaatgaacgaattttaatcatcaattaattatgcag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18814 gttataagcctttgaatatgctgaaaatgaacgaattttaatcatcaattaattatgcag 18755
Query: 328 gttgagaacgggagggagctgttgccagattttcgtttgtggagctgtccgaggtctccc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18754 gttgagaacgggagggagctgttgccagattttcgtttgtggagctgtccgaggtctccc 18695
Query: 388 gtgtcacagctgtcagatgttttacagaaataaaagattagttgtttatcggtgctactg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18694 gtgtcacagctgtcagatgttttacagaaataaaagattagttgtttatcggtgctactg 18635
Query: 448 ttccatccataagtttaaagttccggacctttaaaattactacgttaaataataaaagtc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18634 ttccatccataagtttaaagttccggacctttaaaattactacgttaaataataaaagtc 18575
Query: 508 gaatccttactatgttgaaattgctatgaaccatgaatgaatatgcaaaaaagaagaaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18574 gaatccttactatgttgaaattgctatgaaccatgaatgaatatgcaaaaaagaagaaac 18515
Query: 568 tataaatttggatgatattataagcgaactaacacatatcgggtcaattgaaaggtatcg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18514 tataaatttggatgatattataagcgaactaacacatatcgggtcaattgaaaggtatcg 18455
Query: 628 acatgatcaagatgcaaccaatcgagtcgctagacgctgtaataagcgcagcgaaagata 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18454 acatgatcaagatgcaaccaatcgagtcgctagacgctgtaataagcgcagcgaaagata 18395
Query: 688 ttttattgaatgcgagttcatttagaacgttttgtaatagtttttagtatattctttttc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18394 ttttattgaatgcgagttcatttagaacgttttgtaatagtttttagtatattctttttc 18335
Query: 748 ggcatcccanatcctgtgttttttgggacgaaattgctgtcaattgtcatgaatctt-an 806
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18334 ggcatcccaaatcctgtgttttttgggacgaaattgctgtcaattgtcatgaatcttaaa 18275
Query: 807 agatatgacattctgtcaaagtgcacttttgtgaaatccttgcattgtgagctctgatga 866
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 18274 agatatgacattctgtcaaagtgcacttttgtgaatcctttgcattgtgagctctgatga 18215
Query: 867 aag-tagccattgccctctccgatagatgtgctagctctaaaaggcattatttttgc 922
||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 18214 aagttagccattgccctctcgaatagatgtgctagctctaaagggcattatttttgc 18158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6783
Number of Sequences: 1807
Number of extensions: 6783
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)