BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC06FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1629 0.0
>3x_Contig1320
Length = 7350
Score = 1629 bits (822), Expect = 0.0
Identities = 871/883 (98%), Gaps = 4/883 (0%)
Strand = Plus / Plus
Query: 94 ttcacactcgatctgctgctgttacagtccaaaactcttttcaatttaacatgttagact 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 ttcacactcgatctgctgctgttacagtccaaaactcttttcaatttaacatgttagact 2661
Query: 154 tcttttcaatgatctccatatgtgatttaatgcgaaaatccagattcaaacttttttttc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 tcttttcaatgatctccatatgtgatttaatgcgaaaatccagattcaaacttttttttc 2721
Query: 214 aaagatgacaacacataagcagaaattcttggtacaaaaaggagaagtcacgtgaaaagg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 aaagatgacaacacataagcagaaattcttggtacaaaaaggagaagtcacgtgaaaagg 2781
Query: 274 aatataaaagaactacagccttgaatggcgatatattgatgagagaggtatgaaagtgta 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 aatataaaagaactacagccttgaatggcgatatattgatgagagaggtatgaaagtgta 2841
Query: 334 actttagtttttttaaataatactgatgacacacctatggatagaattcagggaaattta 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 actttagtttttttaaataatactgatgacacacctatggatagaattcagggaaattta 2901
Query: 394 gatgcccaaatcttgctttacgagagatttgcagatgggatgatatgagtctctgaatct 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 gatgcccaaatcttgctttacgagagatttgcagatgggatgatatgagtctctgaatct 2961
Query: 454 gtggaacgttttgatagccaactcacgatccacttcgttcaataaacggtatcctggacg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 gtggaacgttttgatagccaactcacgatccacttcgttcaataaacggtatcctggacg 3021
Query: 514 gacgaacttcattctaccaacagtacctagccactccgctagttccgggtatgatgatgt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 gacgaacttcattctaccaacagtacctagccactccgctagttccgggtatgatgatgt 3081
Query: 574 gatgtgagatttcacttgtaatctgtagtttctaaagataacttctgcgttttgggactt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 gatgtgagatttcacttgtaatctgtagtttctaaagataacttctgcgttttgggactt 3141
Query: 634 ggagatcttatcttcgtagatatcggtgaagatttcagaagcttcagggtagttggacca 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 ggagatcttatcttcgtagatatcggtgaagatttcagaagcttcagggtagttggacca 3201
Query: 694 tttgaaagtatccttttctggcatcccaccttgaactagtgtgtctagcaacaagacgat 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 tttgaaagtatccttttctggcatcccaccttgaactagtgtgtctagcaacaagacgat 3261
Query: 754 ttggttggaagaaaactccgagatatctttgatggagaattccttttcgaa-tgctctct 812
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3262 ttggttggaagaaaactccgagatatctttgatggagaattccttttcgaattgctctct 3321
Query: 813 ttctg-gaatttctgtgcacttgcaatccatttatttgctaatgcatacacatcatccgn 871
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3322 ttctgtgaatttctgtgcacttgcaatccatttatttgctaatgcatacacatcatccgc 3381
Query: 872 ccagtcagtgattagctttggtttaggtggcataccaggggtaaanagccacgttttgca 931
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 3382 caagtcagtgattagctttggtttaggtggcataccaggggtaaagagccacg-tttgcc 3440
Query: 932 cgtcc-canattccaatttctcgcgtttatcatagaagaactc 973
|||| || |||||||| ||||||||||||||| |||||||||
Sbjct: 3441 agtccacagattccaatatctcgcgtttatcatggaagaactc 3483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7348
Number of Sequences: 1807
Number of extensions: 7348
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)