BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC21ZC06RM1.SCF screened BAC_end (975 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1128 593 e-169 >3x_Contig1128 Length = 4759 Score = 593 bits (299), Expect = e-169 Identities = 335/346 (96%), Gaps = 1/346 (0%) Strand = Plus / Plus Query: 45 gcttcggaaccaaccaagaaggctttgatggtagaagttttgatccatggcaagtattga 104 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 4414 gcttcggaaccaaccaagaaggcttcgatggtagaagttttgatccatggcaagtattga 4473 Query: 105 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4474 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 4533 Query: 165 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatctttt 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4534 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcagaa 4593 Query: 225 tcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaataa 284 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4594 gcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaataa 4653 Query: 285 tcatccttttgcttacaagaaccatcgt-gggtcttaacacctaagttgaatgcaagctc 343 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 4654 tcatccttttgcttacaagaaccatcgtggggtcttaacacctaagntgaatgcaagctc 4713 Query: 344 accaacagcagcaacagttgaagcaccggccaacaaagtggcagaa 389 ||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 4714 accaacagcagcaacagtttgagcaccggccaacatagtggcagaa 4759 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9176 Number of Sequences: 1807 Number of extensions: 9176 Number of successful extensions: 101 Number of sequences better than 1.0e-20: 1 length of query: 975 length of database: 10,358,551 effective HSP length: 16 effective length of query: 959 effective length of database: 10,329,639 effective search space: 9906123801 effective search space used: 9906123801 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)