BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZC06RM1.SCF screened BAC_end
         (975 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1128                                                         593   e-169

>3x_Contig1128 
          Length = 4759

 Score =  593 bits (299), Expect = e-169
 Identities = 335/346 (96%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gcttcggaaccaaccaagaaggctttgatggtagaagttttgatccatggcaagtattga 104
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4414 gcttcggaaccaaccaagaaggcttcgatggtagaagttttgatccatggcaagtattga 4473

                                                                        
Query: 105  gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4474 gtcaaagcttgcttttcttcttcgaaatgagcagaatcagttggccaaatacccaagaaa 4533

                                                                        
Query: 165  atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatctttt 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 4534 atggtaaatccggcttcttctgcagcaggacccaaaatttgtaaagtgttacaatcagaa 4593

                                                                        
Query: 225  tcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaataa 284
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 gcagcatatactttgaccttggaggtgtaacccttcaaagtttcgaaatcagctaaataa 4653

                                                                        
Query: 285  tcatccttttgcttacaagaaccatcgt-gggtcttaacacctaagttgaatgcaagctc 343
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 4654 tcatccttttgcttacaagaaccatcgtggggtcttaacacctaagntgaatgcaagctc 4713

                                                          
Query: 344  accaacagcagcaacagttgaagcaccggccaacaaagtggcagaa 389
            |||||||||||||||||||  |||||||||||||| ||||||||||
Sbjct: 4714 accaacagcagcaacagtttgagcaccggccaacatagtggcagaa 4759


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9176
Number of Sequences: 1807
Number of extensions: 9176
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)