BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC07FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1645 0.0
>3x_Contig1770
Length = 29267
Score = 1645 bits (830), Expect = 0.0
Identities = 869/882 (98%), Gaps = 1/882 (0%)
Strand = Plus / Plus
Query: 87 ggctctgaattcgtatcaatgccatcaatgtactggaagaacagcttcaaagtggtttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14277 ggctctgaattcgtatcaatgccatcaatgtactggaagaacagcttcaaagtggtttct 14336
Query: 147 ttttcacagaaaagaacgatactgacatacttcgttgtatcgttagtttcacattgtagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14337 ttttcacagaaaagaacgatactgacatacttcgttgtatcgttagtttcacattgtagt 14396
Query: 207 ctgagatcgtttataaacgcctctaactttgtagccatattcttataaatgttggttggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14397 ctgagatcgtttataaacgcctctaactttgtagccatattcttataaatgttggttggt 14456
Query: 267 tttccaacgccgtgttttagatgttcagataggtgttaataaaccgttgatcgaggctct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14457 tttccaacgccgtgttttagatgttcagataggtgttaataaaccgttgatcgaggctct 14516
Query: 327 acggcgattcacgttcctgttttcattcttaaactttatgtttcaaacttagttacttgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14517 acggcgattcacgttcctgttttcattcttaaactttatgtttcaaacttagttacttgt 14576
Query: 387 tttcctgatgtttacaaattcttgagcttaaacagtatctatttaataacccatcacagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14577 tttcctgatgtttacaaattcttgagcttaaacagtatctatttaataacccatcacagt 14636
Query: 447 aaaagacagttaataaaggtgaattggactcacagccagttgccatagcagcattctgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14637 aaaagacagttaataaaggtgaattggactcacagccagttgccatagcagcattctgaa 14696
Query: 507 agctttaagatacctaattgaatcagtgttgttttaagatgattatctatccaaacaagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14697 agctttaagatacctaattgaatcagtgttgttttaagatgattatctatccaaacaagt 14756
Query: 567 atttagcgtcgagataaaatgtacatgcgtagtctaatttaattgatgaaatattggata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14757 atttagcgtcgagataaaatgtacatgcgtagtctaatttaattgatgaaatattggata 14816
Query: 627 ctgaagaaatcaatagtcaccgctgttatatataccgatatcggattctgccttggcact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14817 ctgaagaaatcaatagtcaccgctgttatatataccgatatcggattctgccttggcact 14876
Query: 687 ggccttgaggacgttcattgcacgagccttttccatttctaaaaggtaaccatcttcgac 746
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14877 ggccttgaggacgttcattgcacgagccttttccaattctaaaaggtaaccatcttcgac 14936
Query: 747 accagtgacatactgacctgtaaacacaccgacttcgaatttttgaatttgcggagtctt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14937 accagtgacatactgacctgtaaacacaccgacttcgaatttttgaatttgcggagtctt 14996
Query: 807 gcaacagtcaatcaaatcgtccaaagatggtntaatgacctcatcacaacctaactcatg 866
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14997 gcaacagtcaatcaaatcgtccaaagattggtaaatgacctcatcacaacctaactcatg 15056
Query: 867 ttggatttcctcttcagtcttatcgtaagcaacc-acttgttagtgtcagcccaatcgat 925
|||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 15057 ttggatttcctcttcagtcttatcgtaagcaaccaactgtttagtgtcagccaaatcgat 15116
Query: 926 accgtaaatattgttgaaacggatggcagnagcancanatgc 967
||||||||||| ||||||||||||||||| |||| || ||||
Sbjct: 15117 accgtaaatatggttgaaacggatggcaggagcagcagatgc 15158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6535
Number of Sequences: 1807
Number of extensions: 6535
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)