BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC07RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1616 0.0
>3x_Contig1020
Length = 4879
Score = 1616 bits (815), Expect = 0.0
Identities = 902/921 (97%), Gaps = 10/921 (1%)
Strand = Plus / Plus
Query: 50 tgaactttg-aaggtaactagtttggtcaccctgaatggttggatttccctaacgttaac 108
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tgaactttgcaaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 2628
Query: 109 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 2688
Query: 169 agataccaatacttgtatcagtttgataaggctatgcaaactactgaatttaattataaa 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2689 agataccaatacttgtatcagtttgataaggctatgcaaactactgaaaagaattataaa 2748
Query: 229 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2749 tggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgca 2808
Query: 289 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2809 ttcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacagat 2868
Query: 349 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 tatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagcat 2928
Query: 409 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 gaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgatttg 2988
Query: 469 aaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 aaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagtt 3048
Query: 529 ctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 ctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgta 3108
Query: 589 tacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 tacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaaa 3168
Query: 649 aaaaaaacttaggacaccacacatatgctagctaaccattcctcaaactataacaatcaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3169 aaaaaaacttaggacaccacacatatgctagctaaccattcctcaaactataacaatcaa 3228
Query: 709 ctcaaaaaaataataaagattaaataaactaattcaaaacatgtatcaataatgcctggc 768
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3229 ctcaaaaaaataataaagataaaataaactaattcaaaacatgtatcaataatgcctggc 3288
Query: 769 gtctcagaatatcaatctatacttattatatgaatctaatgttttcattataattgcatg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3289 gtctcagaatatcaatctatacttattatatgaatctaatgttttcattataattgcatg 3348
Query: 829 atgcagctcagttctaatgttgagtca--taaactgtgaggccacattaanttgctggt- 885
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3349 atgcagctcagttctaatgttgagtcaataaaactgtgaggccacattaa-ttgctggta 3407
Query: 886 atatagaatcattttatatacaggatatct-atcaaa-tcactggtaccaaaa--gtacg 941
||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||
Sbjct: 3408 atatagaatcattttatatacagataatctaatcaaattcactggtaccaaaaaggtacg 3467
Query: 942 tgta-ggttaaaatgttactg 961
|||| ||||||||||||||||
Sbjct: 3468 tgtagggttaaaatgttactg 3488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,065
Number of Sequences: 1807
Number of extensions: 19065
Number of successful extensions: 2822
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)