BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC08FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1489 0.0
>3x_Contig1589
Length = 10239
Score = 1489 bits (751), Expect = 0.0
Identities = 791/799 (98%), Gaps = 4/799 (0%)
Strand = Plus / Minus
Query: 86 tagctgagaagaatgcacatgctagcaacgcaatgcagctatttaaccgtaatgaagaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 tagctgagaagaatgcacatgctagcaacgcaatgcagctatttaaccgtaatgaagaaa 8223
Query: 146 ttctaactcaattgaaaaactgtgaaatgcacatatgtcagttgacatcattgaccaaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 ttctaactcaattgaaaaactgtgaaatgcacatatgtcagttgacatcattgaccaaag 8163
Query: 206 aatacgaaactgagataataaacattcaaagagatatggaagaattcaataaagacaagg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8162 aatacgaaactgagataataaacattcaaagagatatggaagaattcaataaagacaagg 8103
Query: 266 gttcaaagctcaggcagttagaagctaatctctctgaagtctctgcagaagtggaaaaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 gttcaaagctcaggcagttagaagctaatctctctgaagtctctgcagaagtggaaaaat 8043
Query: 326 tagacactgatacggctaagctgtttgatgaatatcagaacttgagttttgacacagaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 tagacactgatacggctaagctgtttgatgaatatcagaacttgagttttgacacagaac 7983
Query: 386 agctacacacagatatttctaacgcccaaaatgaagtatcaattgcagagaaaaggcttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 agctacacacagatatttctaacgcccaaaatgaagtatcaattgcagagaaaaggcttg 7923
Query: 446 cagaactggaaacaacgtgtaatgagtacgagggcgttgtgaggaccaaaaagtctgaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7922 cagaactggaaacaacgtgtaatgagtacgagggcgttgtgaggaccaaaaagtctgaac 7863
Query: 506 ttcacgaagtacacagtattttacaagaggaaatgtccagactttcaggaatggaagatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7862 ttcacgaagtacacagtattttacaagaggaaatgtccagactttcaggaatggaagatg 7803
Query: 566 agatatcagaactagagttattgcttaaaaataagaaccatctactttcaacttcggaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 agatatcagaactagagttattgcttaaaaataagaaccatctactttcaacttcggaag 7743
Query: 626 tggatttacagaagattacaaacgacttgcataaatacaagaataacacttttggcatcg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7742 tggatttacagaagattacaaacgacttgcataaatacaagaataacacttttggcatcg 7683
Query: 686 atcaagccattgaaaa-ttaatcaacgaaaatgattggttggaagatacttccatggtca 744
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7682 atcaagccattgaaaatttaatcaacgaaaatgattggttggaagatacttccatggtca 7623
Query: 745 atagcatcttgacacagaagtagaacattaatctagatcagtacaagaaaacgtggttcc 804
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 7622 atagcatcttgacacagaataagaacattaatctagatcagtacaag-aaacgtggttcc 7564
Query: 805 gatttagccgaaagctttcagagcttaagaaggaaggtg-acccaga-gtaatgagtatg 862
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 7563 gatttagccgaaagctttcagagcttaagaaggaaggtgaacccagaggtaatgagtatg 7504
Query: 863 attgaaagtgtaaagaaaa 881
||||| |||||| ||||||
Sbjct: 7503 attgagagtgtagagaaaa 7485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7269
Number of Sequences: 1807
Number of extensions: 7269
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)