BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC08RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1629 0.0
>3x_Contig1648
Length = 16375
Score = 1629 bits (822), Expect = 0.0
Identities = 863/874 (98%), Gaps = 3/874 (0%)
Strand = Plus / Plus
Query: 49 cacccttctcgttgacatttgcgacacctttagggaaacatttcacaaatttcttggcat 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12029 cacccttctcgttgacatctgcgacacctttagggaaacatttcacaaatttcttggcat 12088
Query: 109 catcaccggtgataggctgtgtgatctggatgtgtggtaatagtctataactagctgtcg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12089 catcaccggtgataggctgtgtgatctggatgtgtggtaatagtctataactagctgtcg 12148
Query: 169 acaccggagagaacttggcatggtctgcaccgatacctagaatacaatgtgcccttaacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12149 acaccggagagaacttggcatggtctgcaccgatacctagaatacaatgtgcccttaacg 12208
Query: 229 aaatctcttgacctggtctcaacttggccaacaagatatctggatccgctgccaccacgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12209 aaatctcttgacctggtctcaacttggccaacaagatatctggatccgctgccaccacgg 12268
Query: 289 gacacttggcaaattgttccacctgtttcccctgaggctcaaacttaaggtccctagcat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12269 gacacttggcaaattgttccacctgtttcccctgaggctcaaacttaaggtccctagcat 12328
Query: 349 agatatgcgcgtttctataaagaaccttggggtcttcacaatcctttggagcatctgggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12329 agatatgcgcgtttctataaagaaccttggggtcttcacaatcctttggagcatctgggt 12388
Query: 409 tcctggtacatttcacgttcaacgacatcactatcgtattttcatctgtaaacctttcag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12389 tcctggtacatttcacgttcaacgacatcactatcgtattttcatctgtaaacctttcag 12448
Query: 469 attcgggcaatgacgtgtccacccaactcaacatatctggatccaccttcaatggcacta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12449 attcgggcaatgacgtgtccacccaactcaacatatctggatccaccttcaatggcacta 12508
Query: 529 acccgattctatgcgccaacacttcgtcctgtagcacagacgtattgttaaaaaagtaga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12509 acccgattctatgcgccaacacttcgtcctgtagcacagacgtattgttaaaaaagtaga 12568
Query: 589 cgtattctggagcgacagatggtacttctgagatcataatacgacggaaagcgttagcaa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12569 cgtattctggagcgacagatggtacttctgagatcataatacgacggaaagcgtta-caa 12627
Query: 649 tcgatgtgtcgacatgaaccaaatcgaaattcacttcacgctcatccaaactctcgattt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12628 tcgatgtgtcgacatgaaccaaatcgaaattcacttcacgctcatccaaactctcgattt 12687
Query: 709 gtacgtcaaaagtttccttgaacttctccaagtcccatgaattgtcttgatccgaactaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12688 gtacgtcaaaagtttccttgaacttctccaagtcccatgaattgtcttgatccgaactaa 12747
Query: 769 atccanggaaatctgntgaaacttgtggtcgtcacacggttatattcaacaccaacgata 828
||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12748 atccagggaaatctgttg-aacttgtgttcgtcacacggttatattcaacaccaacgata 12806
Query: 829 ttggacatnctttttcaattgtattgctaccgttatgctacctcttgagctctcaaacga 888
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12807 ttggacatcctttttcaattgtattgctacgtttatgctacctcttgagctctcaaacga 12866
Query: 889 cctca-naaagccctatgacactggtcaaggtcc 921
||||| |||||||||||||||||||||||||||
Sbjct: 12867 cctcagaaaagccctatgacactggtcaaggtcc 12900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4830
Number of Sequences: 1807
Number of extensions: 4830
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)