BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC09FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1600 0.0
>3x_Contig1486
Length = 12131
Score = 1600 bits (807), Expect = 0.0
Identities = 857/866 (98%), Gaps = 6/866 (0%)
Strand = Plus / Plus
Query: 91 gtctgatgatgatatcgacgctaccttagacgtcgcacagacgtgttttggcgaattaag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9381 gtctgatgatgatatcgacgctaccttagacgtcgcacagacgtgttttggcgaattaag 9440
Query: 151 tcatctgcttgcattaccatcgaaatgtcaaattatccgcaaaaaaagagcagttggatt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9441 tcatctgcttgcattaccatcgaaatgtcaaattatccgcaaaaaaagagcagttggatt 9500
Query: 211 tgtccctggttttatcttcgatgatgaactagaggttaacgttaagatcaaaatcccaag 270
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9501 tgtccctggtttcatcttcgatgatgaactagaggttaacgttaagatcaaaatcccaag 9560
Query: 271 agaagcgttggaggaaatggttcttgttgtacaaaagaaactagaatcatatccacccgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9561 agaagcgttggaggaaatggttcttgttgtacaaaagaaactagaatcatatccacccgc 9620
Query: 331 acaaaatatacaatttagttgctttgatggtggcagcgatgtttggtgtgatattggtgg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9621 acaaaatatacaatttagttgctttgatggtggcagcgatgtttggtgtgatattggtgg 9680
Query: 391 taaagacctgggtgtgtctatcttacagaatttttaccaaacagactctccgatcacagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9681 taaagacctgggtgtgtctatcttacagaatttttaccaaacagactctccgatcacagc 9740
Query: 451 ggcgcaaacgttacacattggtgaccaattcgctcccaaaggttccgcaaacgatttcaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741 ggcgcaaacgttacacattggtgaccaattcgctcccaaaggttccgcaaacgatttcaa 9800
Query: 511 agctcgtagtgctggctgcacattgtggatctcatctcctcgtgagacaatcgaggtatt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 agctcgtagtgctggctgcacattgtggatctcatctcctcgtgagacaatcgaggtatt 9860
Query: 571 agatgatctcttaccatatctatagagaaacagccaagagctgggtatcatattgtcacg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 agatgatctcttaccatatctatagagaaacagccaagagctgggtatcatattgtcacg 9920
Query: 631 tttaatttcgaatcacgtgtatcatttatttataatagcgccagtataagtaaaaaacca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 tttaatttcgaatcacgtgtatcatttatttataatagcgccagtataagtaaaaaacca 9980
Query: 691 gaattgtgtagtatccgggtaagcaccggacgaaacccccagttcaactttttcaaaagg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 gaattgtgtagtatccgggtaagcaccggacgaaacccccagttcaactttttcaaaagg 10040
Query: 751 acctttcttaaaggatttcatcccttgcacaaagcgatgaggcaacagagatgcctgata 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041 acctttcttaaaggatttcatcccttgcacaaagcgatgaggcaacagagatgcctgata 10100
Query: 811 taacgcttnc-aaaacagtgattatcgat-atagagcaaactttacttacttccaatcat 868
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10101 taacgcttccaaaaacagtgattatcgataatagagcaaactttacttacttccaatcat 10160
Query: 869 taatttgagcaaattcattaatacttc-agtaaaggggtttacgagggttttctg-aaat 926
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 10161 taatttgagcaaattcattaatacttcaagtaaaggggtttacgaggg-tttctgaaaat 10219
Query: 927 agttaaagttggtaaggatattaaga 952
|||||||| |||||| ||||||||||
Sbjct: 10220 agttaaag-tggtaaagatattaaga 10244
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)