BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC09RM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1608 0.0
>3x_Contig1654
Length = 17174
Score = 1608 bits (811), Expect = 0.0
Identities = 899/921 (97%), Gaps = 7/921 (0%)
Strand = Plus / Plus
Query: 50 gaagtaatgagtttttcatttgctaacacgacaccgtcttcacactttatacccagagaa 109
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9374 gaagtaatgagtttttcaacagctaacacgacaccgtcttcacactttatacccagagaa 9433
Query: 110 gtggagccgttctctaccgccttcaccgcatactcaacttgaaagttcctaccatccgga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9434 gtggagccgttctctaccgccttcaccgcatactcaacttgaaagttcctaccatccgga 9493
Query: 170 gaaaaaacactattagaaagatcgtaaccagtacctattgatgtctagaatgaaaataaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9494 gaaaaaacactattagaaagatcgtaaccagtacctattgatgtctagaatgaaaataaa 9553
Query: 230 acatcatcccaatcagtgaaaattggattgaacgcgttagtaatttaattgcattattca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9554 acatcatcccaatcagtgaaaattggattgaacgcgttagtaatttaattgcattattca 9613
Query: 290 tagattcttatcctaaaggcataaattaaactcaaaggaaaagggaaactaaagcattcc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9614 tagattcttatcctaaaggcataaattaaactcaaaggaaaagggaaactaaagcattcc 9673
Query: 350 aagcatcggaatgaatattcacataccattttatgaaaagctattgaattgcctgtttga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9674 aagcatcggaatgaatattcacataccattttatgaaaagctattgaattgcctgtttga 9733
Query: 410 attgaacaatgtcagagtctcaacagctgctgattatctgtgtgaagtatcttttaccca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9734 attgaacaatgtcagagtctcaacagctgctgattatctgtgtgaagtatcttttaccca 9793
Query: 470 agcccttgatttgcgtctacacaagacttagttattctcaacctcttaccattgattctt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9794 agcccttgatttgcgtctacacaagacttagttattctcaacctcttaccattgattctt 9853
Query: 530 tatattgactttcccaaatttcgccaccgtaaagtattacccggacatcaattttcctag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9854 tatattgactttcccaaatttcgccaccgtaaagtattacccggacatcaattttcctag 9913
Query: 590 ttccctttaaacaggccattgaagttttggcatcaacacacatcggttgacattagatca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9914 ttccctttaaacaggccattgaagttttggcatcaacacacatcggttgacattagatca 9973
Query: 650 agaagaacggctaggctcacatcattttgcgtcaagcttcgcttgtatatattaagaaag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9974 agaagaacggctaggctcacatcattttgcgtcaagcttcgcttgtatatattaagaaag 10033
Query: 710 tccgagagccctgtatgattcaaacactggctgaaaagcgaatcactgaaagaatatagg 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10034 tccgagagccctgtatgattcaaacactggctgaaaagcgaatcactgaaagaatataag 10093
Query: 770 gaanataatgaccaagactagaattcgaattgtggtatgtggtgacagtgggggttggta 829
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10094 gaaaataatgaccaagactagaattcgaattgtggtatgtggtgacagt-ggggttggta 10152
Query: 830 aaactagcttgattgcttgtttagtgaaagaatcagttcatttcttgggttgcagaactt 889
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |
Sbjct: 10153 aaactagcttgattgcttgtttagtgaaag-atcagttcatttctt-ggttgcaagacgt 10210
Query: 890 acttcctnccattaccattaccgaaagattntncagncagttcgttattctcca-aaaat 948
||||||| | ||||||| |||||||||||| | || ||| ||||||||||||| |||||
Sbjct: 10211 acttcctccaattacca-taccgaaagatttttcaagcag-tcgttattctccagaaaat 10268
Query: 949 actgtntgntgttgatactgg 969
||||| || ||||||||||||
Sbjct: 10269 actgt-tgttgttgatactgg 10288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7088
Number of Sequences: 1807
Number of extensions: 7088
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)