BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC11RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1629 0.0
3x_Contig67 248 2e-65
>3x_Contig1779
Length = 24855
Score = 1629 bits (822), Expect = 0.0
Identities = 873/887 (98%), Gaps = 3/887 (0%)
Strand = Plus / Plus
Query: 42 agctttcacctgaggatatagtgttgggaacagaatcactcaagaagtcgttaaaagtct 101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14981 agctttcacctgaggatatagtgctgggaacagaatcactcaagaagtcgttaaaagtct 15040
Query: 102 ggtgcaaagagttgaaaaagaataaccttattgataggctagatgacccgtccgtacaag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15041 ggtgcaaagagttgaaaaagaataaccttattgataggctagatgacccgtccgtacaag 15100
Query: 162 aagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaagaattttcta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 15101 aagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaagaagatacga 15160
Query: 222 catctctgtttgtagattgggttcgtgacacactattatgatggcctgtttgtaacactt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15161 catctctgtttgtagattgggttcgtgacacactattatgatggcctgtttgtaacactt 15220
Query: 282 attagtaagtacagacaattaaatagcaaccaaaagtactttttgccgtgatcgtgtctg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15221 attagtaagtacagacaattaaatagcaaccaaaagtactttttgccgtgatcgtgtctg 15280
Query: 342 cgtctggaagttgtgttataattaggggttttaaagggagcagcagcacacacgagctat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15281 cgtctggaagttgtgttataattaggggttttaaagggagcagcagcacacacgagctat 15340
Query: 402 taaggtgtttttgagatatgcgccgcagcggatatcgttaccagatacttaaccgcacgc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15341 taaggtgtttttgagatatgcgccgcagcggatatcgttaccagatacttaaccgcacgc 15400
Query: 462 cctccgctcaatgtcccagtttccctctttttcatttttttggttgtactttcagtgttt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15401 cctccgctcaatgtcccagtttccctctttttcatttttttggttgtactttcagtgttt 15460
Query: 522 gctgagagcaatgaaatatcggtattatataataaatcatcagtatgttagcaaaggaca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15461 gctgagagcaatgaaatatcggtattatataataaatcatcagtatgttagcaaaggaca 15520
Query: 582 ttggtaaaataccggtatacaatattgttcgtaacggagaaacaaaaaatatttgcaata 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15521 ttggtaaaataccggtatacaatattgttcgtaacggagaaacaaaaaatatttgcaata 15580
Query: 642 ctcaattctgcgggtgttaaatattgcagatagtggaagataaatcagccaacgcaccaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15581 ctcaattctgcgggtgttaaatattgcagatagtggaagataaatcagccaacgcaccaa 15640
Query: 702 gcagaactttgaatgtataaatatctgctattacgggcggtgttgtcctttccattttcc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15641 gcagaactttgaatgtataaatatctgctattacgggcggtgttgtcctttccattttcc 15700
Query: 762 tgatgctgcccaattacccatcttcttggtcattgaatagatataagtaacatctaaaat 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15701 tgatgctgcccaattacccatcttcttggtcattgaatagatataagtaacatctaaaat 15760
Query: 822 ctaaccgtcaaatcaggctcatcaacaatgttacatccactatccactgaaaatttactt 881
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 15761 ctaaccgtcaaatcaggctcatcaacaatgttacatccactatccactg-aaatttactt 15819
Query: 882 taccttnncacatggnaaacaaggtcccttgcctttggactaggtac 928
|||||| ||| | |||||||||||| ||| ||||||||||||||
Sbjct: 15820 taccttca-acaatggaaacaaggtccc-tgcttttggactaggtac 15864
>3x_Contig67
Length = 1086
Score = 248 bits (125), Expect = 2e-65
Identities = 144/149 (96%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 154 cgtacaagaagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaaga 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 cgtacaagaagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaaga 75
Query: 214 attttctacatctctgtttgtagattggg-ttcgtgacacactattatgatggcctgttt 272
| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 76 agatacgacatctctgtttgtagattgggcttcgtgacacactattatgatggcctgttt 135
Query: 273 gtaacacttattagtaagtacagacaatt 301
|||||||||||||||||||||||||||||
Sbjct: 136 gtaacacttattagtaagtacagacaatt 164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7229
Number of Sequences: 1807
Number of extensions: 7229
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)