BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZC12RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1663 0.0
>3x_Contig1630
Length = 14771
Score = 1663 bits (839), Expect = 0.0
Identities = 916/937 (97%), Gaps = 5/937 (0%)
Strand = Plus / Plus
Query: 40 ctttcaaa-ggtttttgaaagtgttgcaacgtgagaaaaccccagttgaatggcaatttg 98
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 112 ctttcaaatggtttttgaaagtgtcgcaacgtgagaaaaccccagttgaatggcaatttg 171
Query: 99 aagtctcgaatggcaaatctgcggttttcatgtcagagccctttaattttagatctaagt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aagtctcgaatggcaaatctgcggttttcatgtcagagccctttaattttagatctaagt 231
Query: 159 taatcattttagagttaaaagggcatttataggttccttttaattcatgcttgct-ttta 217
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 232 taatcaagttagagttaaaagggcatttataggttccttttaattcatgcaagcacttta 291
Query: 218 acttctcaacaaaatccatagattcttggtttaagtcatctttccaatgcaattttttat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acttctcaacaaaatccatagattcttggtttaagtcatctttccaatgcaattttttat 351
Query: 278 gtcttatcaaatcattggatctggcaaatccacgagaacaaacctcacatttgaaaggcc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtcttatcaaatcattggatctggcaaatccacgagaacaaacctcacatttgaaaggcc 411
Query: 338 gtgtctcgggtgacaggtgggttgacttatgtgttgataaattagagaaaaagagaccac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgtctcgggtgacaggtgggttgacttatgtgttgataaattagagaaaaagagaccac 471
Query: 398 ataaaggacattgcttcttctttcttggttgttttttggaaaccatgtttgcattatttt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ataaaggacattgcttcttctttcttggttgttttttggaaaccatgtttgcattatttt 531
Query: 458 cgatcttcatcttagccgatttcgagttatccataagatgtgtatttagatcacttgatg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cgatcttcatcttagccgatttcgagttatccataagatgtgtatttagatcacttgatg 591
Query: 518 tggataacgatgagagttttgatgtactcgacaccgtagacgagggtgtcgatgtagttg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tggataacgatgagagttttgatgtactcgacaccgtagacgagggtgtcgatgtagttg 651
Query: 578 gtgataaaaccgttgcaattgaatttgttgggcttgtcgcatgattgttagttgntgata 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 652 gtgataaaaccgttgcaattgaatttgttgggcttgtcgcatgattgttagttgttgata 711
Query: 638 tcggagaaatcatatgatgcaagctaccttgggaatgtgagtgtgtatggttacaagagc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tcggagaaatcatatgatgcaagctaccttgggaatgtgagtgtgtatggttacaagagc 771
Query: 698 taccgtggccttgaccgtagtgtgtatgtagctgctggtgatgcacattactattattat 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 taccgtggccttgaccgtagtgtgtatgtagctgctggtgatgcacattactattattat 831
Query: 758 tatcgctagtaggtgacgtttgttgatccattaatganatcatatttgaaatacctgaat 817
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 832 tatcgctagtaggtgacgtttgttgatccattaatgaattcatatttgaaatacctgaat 891
Query: 818 taagtttggggattatctgatgatgtggttgcgaaacagggntaccagcaaaggggggat 877
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 892 taagtttggggattatctgatgatgtggttgcgaaacagggttaccagcaaa-gggggat 950
Query: 878 tgtgtatgaagaaccgntnccattcgacaatgatgatttggaatatgaagatggacgggn 937
|||||||| ||||||| | ||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 951 tgtgtatg-agaaccgttaccattcgacaatgatgattggaaatatgaagatggac-ggt 1008
Query: 938 attgttgaccgttaaggcttgatccggagctgcctgt 974
|||||||||||||| ||||||||||||||||||||||
Sbjct: 1009 attgttgaccgttagggcttgatccggagctgcctgt 1045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7820
Number of Sequences: 1807
Number of extensions: 7820
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)