BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD01FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1562 0.0
>3x_Contig1727
Length = 17872
Score = 1562 bits (788), Expect = 0.0
Identities = 813/820 (99%), Gaps = 1/820 (0%)
Strand = Plus / Minus
Query: 86 attgaaattgaatttcccgtccaaaacaggtacattgaaagcaaattggaccccactaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 attgaaattgaatttcccgtccaaaacaggtacattgaaagcaaattggaccccactaga 5601
Query: 146 aacgttcaacgtgttatgtgccaagaataatcttgagatagaatcattatcatttacctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 aacgttcaacgtgttatgtgccaagaataatcttgagatagaatcattatcatttacctg 5541
Query: 206 gagcgtctccatcggtttggaaacgttacgagtatcccatgatactatcgtaccatccga 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 gagcgtctccaccggtttggaaacgttacgagtatcccatgatactatcgtaccatccga 5481
Query: 266 atagccagcaaataggtaatggtcatcacctgcaatgtgctggctcgttagagtgacaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 atagccagcaaataggtaatggtcatcacctgcaatgtgctggctcgttagagtgacaca 5421
Query: 326 tgcagatttacttgccggtaaaatatccaatatcttctttctgttatagatatcatgaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 tgcagatttacttgccggtaaaatatccaatatcttctttctgttatagatatcatgaaa 5361
Query: 386 cgtgatgataccagagtcgtgtccagcaaatacagctttcccctcagtattgtattcgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5360 cgtgatgataccagagtcgtgtccagcaaatacagctttcccctcagtattgtattcgtt 5301
Query: 446 gctatggtccaatgcattgtacgatgtggtcgctggatttccctggtaattggccaatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 gctatggtccaatgcattgtacgatgtggtcgctggatttccctggtaattggccaatga 5241
Query: 506 aatacaatttatgccatcgtttgaattgagcgtaaagacacatgctgaagttgagcattc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 aatacaatttatgccatcgtttgaattgagcgtaaagacacatgctgaagttgagcattc 5181
Query: 566 ccatagttttaatgatccatccgaacttgcagagacgaagtttctacctctatcgaccat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 ccatagttttaatgatccatccgaacttgcagagacgaagtttctacctctatcgaccat 5121
Query: 626 ggcaaaatcgttgactgaccgagtatgacctatgaaagttctgagctcagtaccggttga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 ggcaaaatcgttgactgaccgagtatgacctatgaaagttctgagctcagtaccggttga 5061
Query: 686 agcatcccaaatcttcaagcgcatatcgatactactgcttaagaatccatggccgttagg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 agcatcccaaatcttcaagcgcatatcgatactactgcttaagaatccatggccgttagg 5001
Query: 746 gaaaaattgggtcttggtgatgtgactagcgtgcgcttccggtaactttatcacttcttg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 gaaaaattgggtcttggtgatgtgactagcgtgcgcttccggtaactttatcacttcttg 4941
Query: 806 taatggaccgctataattggtaccggtgttctttcgtagcacatttatgccaccattcgt 865
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 4940 taatggaccgctataattggtaccggtgttcttccgtagcacatatatgccaccattcgt 4881
Query: 866 atcaccacaaacccaacgtattttgggggtcaaacacgtt 905
||||||||||||| |||||| | | |||||||||||||||
Sbjct: 4880 atcaccacaaaccaaacgta-tctcggggtcaaacacgtt 4842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5078
Number of Sequences: 1807
Number of extensions: 5078
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)