BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD01RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 977 0.0
3x_Contig1760 644 0.0
>3x_Contig1708
Length = 19451
Score = 977 bits (493), Expect = 0.0
Identities = 548/564 (97%), Gaps = 4/564 (0%)
Strand = Plus / Plus
Query: 348 atctcatcgataaagagattgcatgtcgacgcagcaactgataaagaaatttttaaagtc 407
|||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct: 1 atctcatcgataaagagattgcatttgtaggcagcaactgataaataaatttttaaagtc 60
Query: 408 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 120
Query: 468 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 180
Query: 528 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 240
Query: 588 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 300
Query: 648 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgaaggagc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attatttaaacgatgaagaatttgaattgatgaaccagttgtttcccctggcgaaggagc 360
Query: 708 aattagctgattatcagggttgggataacttggccgtgaaagttgcgatttttgatcaca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattagctgattatcagggttgggataacttggccgtgaaagttgcgatttttgatcaca 420
Query: 768 atttcgagttagaacctgcattggtcgatttanagagaagattca--gaaaaggttatgt 825
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct: 421 atttcgagttagaacctgcattggtcgatttaaagagaagattcaagaaaaagggtatgt 480
Query: 826 ataattggcattggacgtggcggnngttttatatttttacgtgttttcaggtatgatttc 885
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 481 ataattggcattggacgtggcgg-tgttttatatttttacgtgttttcagttatgatttc 539
Query: 886 ttgttgggntcttccatggtnaac 909
||||| || ||||||||||| |||
Sbjct: 540 ttgtt-ggttcttccatggtaaac 562
>3x_Contig1760
Length = 27266
Score = 644 bits (325), Expect = 0.0
Identities = 339/341 (99%), Gaps = 2/341 (0%)
Strand = Plus / Plus
Query: 48 ccccttcc-tagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacgatat 105
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26926 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacgatat 26985
Query: 106 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 27045
Query: 166 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 27105
Query: 226 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27106 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 27165
Query: 286 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27166 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 27225
Query: 346 tcatctcatcgataaagagattgcatgtcgacgcagcaact 386
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 27226 tcatctcatcgataaagagattgcatgtcgacgcagcaact 27266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7549
Number of Sequences: 1807
Number of extensions: 7549
Number of successful extensions: 310
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)