BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD03RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig394 1653 0.0
>3x_Contig394
Length = 1378
Score = 1653 bits (834), Expect = 0.0
Identities = 922/945 (97%), Gaps = 5/945 (0%)
Strand = Plus / Minus
Query: 49 gcttcgtcacgttcctttggaatt-tacttccctgattatactgggggcaaagacatcaa 107
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1051 gcttcgtcacgttcctttggaaaagtacttccctgattatactgggggcaaagacatcaa 992
Query: 108 taaagctgccaaatatattctttggagatttgttcagttgaatagggccaatctcaacat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 taaagctgccaaatatattctttggagatttgttcagttgaatagggccaatctcaacat 932
Query: 168 atatcctcacgtcactcaagcgactgatacttcaaatatcaaactagtgtttgttgtttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 931 atatcctcacgtcactcaagcgactgatacttcaaatatcaaactagtgtttgctgcaat 872
Query: 228 caaggaaactatcttagaaaacagcttaaaagactctggtgttttgtagggaatgtgata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 caaggaaactatcttagaaaacagcttaaaagactctggtgttttgtagggaatgtgata 812
Query: 288 gcggcacatgaatactaaggataacaaattttatactaatgactttcaactttcaacttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gcggcacatgaatactaaggataacaaattttatactaatgactttcaactttcaacttc 752
Query: 348 caacttatcgaacagttttatgaggataatgaaatgtaagataatgtgatctatttcagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caacttatcgaacagttttatgaggataatgaaatgtaagataatgtgatctatttcagt 692
Query: 408 actaataatatcaacatcatgtaacgtgttatcaccgaagcctgtccttgttcatgaagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 actaataatatcaacatcatgtaacgtgttatcaccgaagcctgtccttgttcatgaagt 632
Query: 468 ttagtcgataacaagaatgatttttcctagtttgcaataatgtaaagtttttattaaatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttagtcgataacaagaatgatttttcctagtttgcaataatgtaaagtttttattaaatt 572
Query: 528 tcaggcaaatttaaaatcgttttggactggatccaacatatgtttttagtccctattgag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcaggcaaatttaaaatcgttttggactggatccaacatatgtttttagtccctattgag 512
Query: 588 atatctctcttatcttgtatattgatttacggtataacgcaaaggttcaactctttccgt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atatctctcttatcttgtatattgatttacggtataacgcaaaggttcaactctttccgt 452
Query: 648 tatgtaagttaaatataaaaactattcagttagatccgatagtaaccgtttagtggacta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tatgtaagttaaatataaaaactattcagttagatccgatagtaaccgtttagtggacta 392
Query: 708 tgagaattaaatgaaggtcaagtattgggcccttgc-tttttttttactcagacttaaag 766
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 tgagaattaaatgaaggtcaagtattgggcccttgcttttttttttactcagacttaaag 332
Query: 767 tatgcaatgtatatatatctatattttcgatatgttctaaccttcacctcttttattcgg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 331 tatgcaatgtatatatatctatattttcgatatgttctaaccttcacctctttaatcgga 272
Query: 827 agtcacatttagcagcana-tatcagcatattccgggtgaagatcgcttttaaatccaga 885
||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||||
Sbjct: 271 agtcacatttagcagcaaattatcagcatattccggtgaaagatcgctttaaaatccaga 212
Query: 886 gcaactatttattaagatgaaatactttcgatgttcatccatatgttaccaatgacctat 945
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 gcaactatttattaagatgaaatactttcgatgttcatccatatgtaaccaatgacctat 152
Query: 946 accggtcattaaagcatatttgggattccttattc-tcggcactt 989
|||| |||||||||||||||| ||| ||||||||| |||||||||
Sbjct: 151 accgctcattaaagcatattt-ggaatccttattcatcggcactt 108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8253
Number of Sequences: 1807
Number of extensions: 8253
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)