BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD05FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1057 0.0
3x_Contig186 505 e-143
>3x_Contig1706
Length = 16303
Score = 1057 bits (533), Expect = 0.0
Identities = 564/572 (98%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 392 atattaacaaaaatgaacaatgtaattgcaatgacttaaacattttaaactatggatatt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16303 atattaacaaaaatgaacaatgtaattgcaatgacttaaacattttaaactatggatatt 16244
Query: 452 gatatatataagggtggatatatctataacaaatcttattaagatcagagttattttatt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16243 gatatatataagggtggatatatctataacaaatcttattaagatcagagttattttatt 16184
Query: 512 atttctgtgaagggcagtagcaaagcggagatattggtattagacggtttaccctaagaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16183 atttctgtgaagggcagtagcaaagcggagatattggtattagacggtttaccctaagaa 16124
Query: 572 tctcgttaggtgctctggatataatatcatgttcaagcaattcaacttgagatgcctgac 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16123 tctcgttaggtgctctggatataatatcatgttcaagcaattcaacttgagatgcctgac 16064
Query: 632 gccgcttgccagcggcgtctcctcaagagttcaagttccgtggaatgtttcgatgataat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16063 gccgcttgccagcggcgtctcctcaagagttcaagttccgtggaatgtttcgatgataat 16004
Query: 692 gtctttgaacaatacttcacttggtggaatcagatctatggccagcatcactccaaccgg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16003 gtctttgaacaatacttcacttggtggaatcagatctatggccagcatcactccaaccgg 15944
Query: 752 gaatgaagaacaatcttcagttgacgatgtcaatgtccatatgtttgaaaatcgttccta 811
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15943 gaatgaagaacaatcttcagttgacgatgtcaatgtccatatg-ttgaaaatcgttccta 15885
Query: 812 ataacacagatgtggtagcactagagaagcaagacgaattggttagaagaagaagaaagt 871
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 15884 ataacacagatgtggtagcactagagaagcaagacgaattgttaagaagaagaagaaagt 15825
Query: 872 tggctaagggagntacacaaatgaagaaatttgaaccggtttctccaggtttgagatggt 931
||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15824 tggctaaggaagttacacaaatgaagaaattgaaaccggtttctccaggtttgagatggt 15765
Query: 932 accgtgcgccaatttat-catatttgcataag 962
||||||||||||||||| ||||||||||||||
Sbjct: 15764 accgtgcgccaatttatccatatttgcataag 15733
>3x_Contig186
Length = 1329
Score = 505 bits (255), Expect = e-143
Identities = 261/263 (99%)
Strand = Plus / Minus
Query: 86 tgtaacggataataaagtattcgtgatgagatagaaacttacctcaaaatttttcacttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtaacggataataaagtattcgtgatgagatagaaacttacctcaaaatttttcacttt 204
Query: 146 tccagttatttaaactaaaaaccataaaacagaaagaatagtcaatctaaccatgagaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tccagttatttaaactaaaaaccataaaacagaaagaatagtcaatctaaccatgagaga 144
Query: 206 ctggtctgccattagggcacaaaataagtacacaaagatttcctgaatcacgtgaccaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ctggtctgccattagggcacaaaataagtacacaaagatttcctgaatcacgtgaccaaa 84
Query: 266 tattatataatccgggtaaattcagaatacgttcatagtgatacttcttgcaaaaaattc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tattatataatccgggtaaattcagaatacgttcatagtgatacttcttgcaaaaaattc 24
Query: 326 catttgacgatattcctctgatg 348
|| |||||||||||||||||||
Sbjct: 23 caggtgacgatattcctctgatg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9180
Number of Sequences: 1807
Number of extensions: 9180
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 2
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)